Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3747 ATGAAGAGAAAATCTCTTGCAGCGGACCGTGATGATGAAAAGAAGAAAACAAAGAAAGCATCAGCTACTTATCGAGGTAAATCCTCAAAAAGATTCAGCTGTGTTATATGCTTTGATTCTGTATCAATCTCTAATATCTTCACCATCACTTCATGCAAGCATCGCTTTTGTGCTAACTGCATATCCAAGTATGTGAATATTCAAATAAACAAAAATGCGGTGAAAGTGAGTTGTCCAAATCCAGAATGTTCCGTGGAACTGAAACCACAACATTTGCAATCCGTTTTACCTAAACAAGTCATTATTGAGTGGGAATCTGCTATCTATGAGTCTTCGATTTCTTTGGAGCAAAAAATATACTGTCCTTATCAGAATTGTTCTCTTATGCTCGTGAATGACGGGGAAGGAGTTGTTACAAGTTGTGAATGTCCTTCTTGTCATAGGCTATTCTGTGCACAATGTAAGGTTCCATGGCACGCTGATATGAATTGCCGAGAATTTCAGAAGTCGAAAACGGGTCGAGATGAAAAACAGTTGGATCTGAAATTTTGGGAGTTGGCTAAAAGAAAGAAATGGCAGAGATGTCCCAAATGTTCTATGCATGTTCAAAGAGATGGTGGATGTGAACACATTTCGTGCAGGTGTGGATGTAACTTTTGCTACAAGTGTGGTAAGGATTGGATTCATGGACATGCTTGCAATACACCTAGATTATAG 717 0.3877 MKRKSLAADRDDEKKKTKKASATYRGKSSKRFSCVICFDSVSISNIFTITSCKHRFCANCISKYVNIQINKNAVKVSCPNPECSVELKPQHLQSVLPKQVIIEWESAIYESSISLEQKIYCPYQNCSLMLVNDGEGVVTSCECPSCHRLFCAQCKVPWHADMNCREFQKSKTGRDEKQLDLKFWELAKRKKWQRCPKCSMHVQRDGGCEHISCRCGCNFCYKCGKDWIHGHACNTPRL* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3747 238 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 8 233 - -
Psa5g3747 238 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 8 233 IPR031127 GO:0004842|GO:0016567
Psa5g3747 238 MobiDBLite consensus disorder prediction 1 20 - -
Psa5g3747 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 114 IPR013083 -
Psa5g3747 238 Pfam Zinc finger, C3HC4 type (RING finger) 34 79 IPR018957 GO:0046872
Psa5g3747 238 ProSiteProfiles TRIAD supradomain profile. 30 238 IPR044066 -
Psa5g3747 238 Pfam IBR domain, a half RING-finger domain 186 231 IPR002867 -
Psa5g3747 238 Pfam IBR domain, a half RING-finger domain 109 164 IPR002867 -
Psa5g3747 238 MobiDBLite consensus disorder prediction 1 19 - -
Psa5g3747 238 ProSiteProfiles Zinc finger RING-type profile. 34 79 IPR001841 -
Psa5g3747 238 SUPERFAMILY RING/U-box 29 111 - -
Psa5g3747 238 SUPERFAMILY RING/U-box 178 234 - -
Psa5g3747 238 Gene3D - 162 237 - -
Psa5g3747 238 ProSitePatterns Zinc finger RING-type signature. 52 61 IPR017907 -
Psa5g3747 238 SUPERFAMILY RING/U-box 116 170 - -
Psa5g3747 238 SMART ibrneu5 102 164 IPR002867 -
Psa5g3747 238 SMART ibrneu5 177 233 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3747 Psa-Chr5 295871069 295871877 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3747 33 224 C3H Transcription Factor Family AT2G19610 29.557 1.23e-24 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3747 K11975 - mtr:MTR_3g462570 326.25