Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3735 ATGAAGCTCTCACTCTTTGGAAAACAAGATTCGTCAAAACAACTTTCTTCCCATACCAATGCAGCAAACAAAACATGTGGTATATGCTTTGATGTGAAAACAGATTCTGATATATTCAAAATAAGGTCCAAAGTTTTCCAAAGAAGAAAGTGCAAGCACCTCTTTTGTGTTGATTGCATATGCAAGTACGTAGCTGTTCAAATAAATGATAATGCCTATAAGGTGATGTGTCCAAGTCAAAATTGTTGTGTGAAATTTAAGCCAAAACATTTGCAACACATTTTGCCAAAACAACTTATTGCTAAATGGGAGAATTTGATTTACAAGTCTTTGGCTCCGATGGAGCCAAAGACTTACTGCCCTTATCAGAATTGTTCTGTTTTGTTGGTGAAAGATAATGACATGAGTGGAGATTTTGCCCACAGTTCTAAGTGCCCTTCGTGTCACAGAAACTTTTGTGCACGGTGCAAAGTTCCATGGCATGCAGGAACGAATTGTCAGAATTTCCAACAGTTGAAAAGGAATGACAAGAATGATTTGGATAACAAGTTTTTGGAGTTGGCCAGAAAAGCAAAGTGGCAAAGATGTCCAAATTGCTCTATGTATGTCAAGAAAAGTAGTGGATGTAGTTACATGAAATGCAGGTGTGGATGCAAATTCTGCTACAGGTGTGGGAAGAAACGGCAATTTGCACATTCATGCGGTAGAAGTTAG 714 0.381 MKLSLFGKQDSSKQLSSHTNAANKTCGICFDVKTDSDIFKIRSKVFQRRKCKHLFCVDCICKYVAVQINDNAYKVMCPSQNCCVKFKPKHLQHILPKQLIAKWENLIYKSLAPMEPKTYCPYQNCSVLLVKDNDMSGDFAHSSKCPSCHRNFCARCKVPWHAGTNCQNFQQLKRNDKNDLDNKFLELARKAKWQRCPNCSMYVKKSSGCSYMKCRCGCKFCYRCGKKRQFAHSCGRS* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3735 237 ProSitePatterns Zinc finger RING-type signature. 51 60 IPR017907 -
Psa5g3735 237 Gene3D - 163 236 - -
Psa5g3735 237 SUPERFAMILY RING/U-box 24 110 - -
Psa5g3735 237 SUPERFAMILY RING/U-box 106 171 - -
Psa5g3735 237 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 10 234 IPR031127 GO:0004842|GO:0016567
Psa5g3735 237 ProSiteProfiles TRIAD supradomain profile. 22 237 IPR044066 -
Psa5g3735 237 Pfam IBR domain, a half RING-finger domain 102 166 IPR002867 -
Psa5g3735 237 Pfam IBR domain, a half RING-finger domain 187 232 IPR002867 -
Psa5g3735 237 SUPERFAMILY RING/U-box 183 234 - -
Psa5g3735 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 114 IPR013083 -
Psa5g3735 237 ProSiteProfiles Zinc finger RING-type profile. 26 78 IPR001841 -
Psa5g3735 237 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 10 234 - -
Psa5g3735 237 SMART ibrneu5 178 234 IPR002867 -
Psa5g3735 237 SMART ibrneu5 101 166 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3735 Psa-Chr5 294959024 294962705 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3735 24 225 C3H Transcription Factor Family AT2G19610 27.488 8.36e-17 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3735 K11975 - mtr:MTR_0777s0010 280.411