Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3731 ATGAAGTGTGAAATGGGAATTCTTTCTTCTCATGCACCATTTGTTGAAAACAATTGGTTTATGGAAGATAGTTATAACATTAACAGGAGAATAACAAAATGGACTGTATCAGAGAACAAATTGTTTGAAAATGCTCTTGCTGTTTATGATAAAGATACGCCGGATCGGTGGGTTAAGGTAGCTGAAATGATACCGGGAAAATCTGTTGTTGATGTGATGAATCAGTATAAGGAATTGGAAGTTGATGTTTGTAATATTGAAGCTGGTTTGGTTCCGATTCCGGGTTATACTACTACTAGTACTAGTAGTACCTCACCTTTTACCTTAGATTGGGTGAGTTCTTCTGGTTATGATGGTTTTAGAGGAATCAATTCTAAGAGAAGCGCGTCTGGTAGAGCGCCGGATCAGGAGAGGAAGAAAGGTGTGCCGTGGACCGAAGAAGAACACAAGTTATTTCTGTTGGGTCTGAAAAAGTATGGAAAAGGTGATTGGAGAAACATATCAAGAAACTTTGTGATCACAAGAACACCAACACAAGTCGCCAGCCATGCTCAAAAATATTTCATCCGGCAACTCTCCGGCGGCAAAGACAAAAGAAGAGCTAGCATCCATGACATAACAACTGTTAACCTCACAGAAACTTCAAAAGCTTCTCCAACTTCAGAAAACACCAAAACATCCACTTCACCACACCACCATAACCATTCCATGAACCTCAACAAATATTCCCCCGCCGCATCCGAGATGCATTTTCAGCCGGCTATGATGATGACAGCTTTCAACCCTTCTCATGAACAAGTTTTCATGTCTCCTAGTAACTCTTATGGATTCAAAATGCAAGGTCTAAATCAAAATATGCATAGAAATCCTCTTCATGAGTCTTCTTACTTTGGAACTCAAGCACAAAACATGGTTTTCCAAATGCAACCTTCTCAACAAAACTATGCATGA 951 0.3975 MKCEMGILSSHAPFVENNWFMEDSYNINRRITKWTVSENKLFENALAVYDKDTPDRWVKVAEMIPGKSVVDVMNQYKELEVDVCNIEAGLVPIPGYTTTSTSSTSPFTLDWVSSSGYDGFRGINSKRSASGRAPDQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETSKASPTSENTKTSTSPHHHNHSMNLNKYSPAASEMHFQPAMMMTAFNPSHEQVFMSPSNSYGFKMQGLNQNMHRNPLHESSYFGTQAQNMVFQMQPSQQNYA* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3731 316 CDD SANT 33 79 IPR001005 -
Psa5g3731 316 ProSiteProfiles Myb-like domain profile. 26 80 IPR001005 -
Psa5g3731 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 136 192 IPR017930 -
Psa5g3731 316 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 280 IPR043363 -
Psa5g3731 316 ProSiteProfiles Myb-like domain profile. 136 188 IPR001005 -
Psa5g3731 316 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 139 191 IPR006447 GO:0003677
Psa5g3731 316 MobiDBLite consensus disorder prediction 212 236 - -
Psa5g3731 316 ProSiteProfiles SANT domain profile. 144 192 IPR017884 -
Psa5g3731 316 CDD SANT 143 188 IPR001005 -
Psa5g3731 316 PANTHER MYB TRANSCRIPTION FACTOR MYB51 1 280 - -
Psa5g3731 316 SUPERFAMILY Homeodomain-like 33 86 IPR009057 -
Psa5g3731 316 SMART sant 30 82 IPR001005 -
Psa5g3731 316 SMART sant 140 190 IPR001005 -
Psa5g3731 316 Gene3D - 142 192 - -
Psa5g3731 316 Gene3D - 28 93 - -
Psa5g3731 316 Pfam Myb-like DNA-binding domain 143 188 IPR001005 -
Psa5g3731 316 SUPERFAMILY Homeodomain-like 138 191 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3731 Psa-Chr5 294574147 294577094 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa5g3731 Myb_DNA-binding 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3731 - - cam:101514273 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3731 5 294574147 294577094 Psa5g3731 5 294574147 294577094 ECH
Psa5g3731 5 294574147 294577094 Psa2g0823 2 50545126 50547796 ECH
Psa5g3731 5 294574147 294577094 Psa2g1375 2 103951472 103955513 ECH