Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3729 ATGAGTAAACATGCCTCTCTTGAAGAGCCCCTTTTGAAGGATGAAGCTAGTGTAAACAACAACAATTCTGATTCCAATGAGATTTTAACAAGTTATTCAAAGGCTGGATTTTTCAGCATTCTTACTTTCTCATGGATGAGTCCACTAATAACATTAGGGAGTAAAAAGACTTTAAACCATGAAGATCTTCCACTTCTTTCTGCCAATGACACTGCCTATGGAACTTTTTCAACTTTTAGAAAAAAGCTTGAGTTGGAGTGTGGTAATGTTAGGACTGTGACAACTATTAAACTCGCTAAGGTGTTGTTGTTATCGACATGGGAAGGGATTCTTATATCTGGCTTATATGCTTTCGTGTACGTATGTGCTACTTATGTAGGACCTTACCTTATTGACAACCTTGTTCAATATCTCAATGATGAAAACAAGGCTAAAAATGAAGGCTATGTTTTGGCTACGGCGTTTGTTGCATCGAAACTTGTTGAGTGTCTTTCGCAAAGGCACTGGATGTTTACGTTCCAACAGGTTGGTGTTAGGATGCAATCAATGTTGGTGTCGATTATCTATGCTAAAGGTTTGACACTTTCGTGTAAATCAAAAGAGGGACATAGCAGCGGCGAAATCATCAACTTAATGACTGTTGATGCTGAAAGGATAGGTGAGTTTTGTTGGTATATGCATGACCTATGGATGGCTGTTCTGCAAGTTTCTTTGGCTTTGTTTATTCTTCGTAGAAGTGTCGGGGTTGCTTCAGTTGCTACTTTTGCTGCAACTGTTATCGTGATGCTGCTAAACCTTCCTATGGCATCCTTACAAGAGAAGTTCCAAGCTAATTTAATGGAGTTCAAGGATAAGAGAATGAAGGCAACGACTGAGATTCTAATGAACATGAGGATTCTTAAGCTTCAAGCGTGGGAGATGAAGTTCTTATCGAAGATCATTCAGCTTAGGAAGTTAGAGGAGACGTGGCTAAAGAAATTTCTTATTGGTACAGCTATTGTTAGATTTCTCTTCTTTAACACCCCAACGTTTGTTGCAGTGGTCACTTTCGGTGCTTGTGTTCTTCTAGGCATTCCACTTGAAACAGGAAAGATCTTATCCGCTCTTGCAACGTTCAGAATTCTTCAAATGCCTATCTATAACTTTCCCGACACACTTTCAGTGATGGCAGAAACCAAGGTTTCCCTCGATAGGGTTGTTGCTTTTCTTCGTCTAGATGATTTACAGACTGATGTAGTGGAGAAGCTTCCGCGAGGTAGTTCTGATATAGCAATTGAAATAGTAGATGGAAATTTCTCTTGGGAATTATCTTCTGTTTATACAACGTTGAAAAACATAAACCTTCGAGTTTTCCATGGTACGAGGGTCGCTGTTTGTGGCACGGTTGGATCAGGCAAGTCTAGTTTACTTTCTTGTATAATAGGCGAAATACCGAAGATATCTGGGATTTTGAAGGTGTGTGGAACAAAGGCTTTTGTTGCTCAATCAGCATGGATACAAAGCTGCAAGATCGAAGAGAACATACTATTCGGTAAAGAGATGGATAGGGAAAAATACGAGAAGGTGCTAGAAGCATGTTCGTTGAAGAAAGACCTAGAGGTTTTACCATTTGGTGATCAGACCATTATTGGAGAGAAGGGAATTAATTTGAGTGGTGGACAGAAACAAAGAGTACAAATCGCCCGTGCTCTTTACCAAGATGCCGATATATATCTACTCGACGACCCCTTTAGTGCTGTTGATGCTCATACAGGTTCCCATCTCTTTAAGGAGTGTTTGCTTGGCCTTTTGAAAACAAAAACTGTGATATACATAACACATCAAGTAGAGTTCTTACCTGACGCGGATCTGATACTTGTTATGAAAGAAGGAAGGATAACTCAATCAGGAAAATACAATGACATTCTTACATCAGGAACCAATTTTATGGAACTTGTAGGCGCACACAGAAAAGCATTGTCTTCACAAGAAGTGGAAAACATAGATGGTCGAAACGGAAAGCTAGATGAAACAATTGTTCCGAAAGGCCAACTTGTTCAAGACGAAGAACGTGAAAGGGGTAGTATCGGGTTGAAAGTGTTCTGGAAATACATAACAACAGCTTATGGAGGAGCACTTGTACCTTTCCTATTTCTTTCACAGATACTCACTGTGGTTTTACAAATTGCAAGCAATTATTGGATGGCTTTGGCAACTCCTGTTTCAGCAACTGCAGAACCTGCTATCGGAACCTTTACTCTGATGGTTGTCTATGTCTCTTTGGCAATTGGAAGTTCCTTTACCACCCTTGCCAGAGCAGTTCTTGCCGCGATAGCCGGATACAAGACAGCCACCATGCTCTTCAATCAAATGCATTTGAGCTTCATTCGCGCTCCAATGTCATTTTTCGATTCCACCCCAAGTGGAAGAATTCTTAATAGAGCTTCGACAGACCAAAGTACAGTAGATATGAGCATTTCAAACCTAGCGTGGGGATTTACCTACGATCTCGTTCAGCTCTTGGGAATTATTGCTGTGATGTCTCAAGCGGCATGGCAGGTGTTCATAGTATTGATTCCTGTCATGGCAGCATGCATATGGTATCAGCGATACTACTCGGCATCAGCACGGGAATTGGCGCGATTAACTGGTATATGTCAAGCTCCAGTTATACAACATTTTTCTGAAACAATTTCTGGATCAACAACCATAAGCTGTTTTGAGCAAGAATCAAGATTTAACGAAACGAATATGCAATTGATAGACAAATTCTCCCAGCCTAAACTATACAGTGCCAGTGCGATGGAATGGTTGAGTTTTAGATTGGATCTTTTATCCTCTACCATATTTGCTTTCTGCTTGGCTTTCTTGGTATCTTTTCCAAGTTCAATAGCCGATCCTCGCATTGCGGGATTAGCTGTGACATATGGGATTAATCTAAATGCTGTACAATCTAGTTTAATTTCGATTCTTTGCAATTTGGAGAACAAAATTATATCGGTAGAAAGAATACTTCAGTACACTTCCATCCCAAGTGAAGCGCCTTTTGTAATAAAAGACAATCAACCCGATCATTCTTGGCCCTCATTCGGAGAGGTTCATATCCAGGATTTACAGGTTCAATATGCCCCTCACTTGCCTCTTGTTTTACGCGGACTTACATGCACTTTTACTGCTGGAGCAAAAACTGGCATTGTGGGAAGAACAGGAAGTGGAAAAACAACTCTAGTGCAAGCACTTTTTAGGCTTGTTGAGCCTCTTGCAGGAAAAATATTGATCGATAACATCAACATCTCATCGATTGGAGTCCATGATTTACGGTCCAGACTAAGCATAATCCCGCAGGATCCAACAATGTTTGAAGGGACTGTAAGAAGCAACCTCGACCCGCTGGAAGAGTACACAGATGAACAAATATGGGAGGCTCTTGGTATGTGCCAACTTGGAGATGAAGTGAGAAAGAAAGTAGGAAAGCTTGATTCTCCGGTTACTGAGAATGGCGAAAACTGGAGCATGGGTCAAAGACAGTTG 3510 0.408 MSKHASLEEPLLKDEASVNNNNSDSNEILTSYSKAGFFSILTFSWMSPLITLGSKKTLNHEDLPLLSANDTAYGTFSTFRKKLELECGNVRTVTTIKLAKVLLLSTWEGILISGLYAFVYVCATYVGPYLIDNLVQYLNDENKAKNEGYVLATAFVASKLVECLSQRHWMFTFQQVGVRMQSMLVSIIYAKGLTLSCKSKEGHSSGEIINLMTVDAERIGEFCWYMHDLWMAVLQVSLALFILRRSVGVASVATFAATVIVMLLNLPMASLQEKFQANLMEFKDKRMKATTEILMNMRILKLQAWEMKFLSKIIQLRKLEETWLKKFLIGTAIVRFLFFNTPTFVAVVTFGACVLLGIPLETGKILSALATFRILQMPIYNFPDTLSVMAETKVSLDRVVAFLRLDDLQTDVVEKLPRGSSDIAIEIVDGNFSWELSSVYTTLKNINLRVFHGTRVAVCGTVGSGKSSLLSCIIGEIPKISGILKVCGTKAFVAQSAWIQSCKIEENILFGKEMDREKYEKVLEACSLKKDLEVLPFGDQTIIGEKGINLSGGQKQRVQIARALYQDADIYLLDDPFSAVDAHTGSHLFKECLLGLLKTKTVIYITHQVEFLPDADLILVMKEGRITQSGKYNDILTSGTNFMELVGAHRKALSSQEVENIDGRNGKLDETIVPKGQLVQDEERERGSIGLKVFWKYITTAYGGALVPFLFLSQILTVVLQIASNYWMALATPVSATAEPAIGTFTLMVVYVSLAIGSSFTTLARAVLAAIAGYKTATMLFNQMHLSFIRAPMSFFDSTPSGRILNRASTDQSTVDMSISNLAWGFTYDLVQLLGIIAVMSQAAWQVFIVLIPVMAACIWYQRYYSASARELARLTGICQAPVIQHFSETISGSTTISCFEQESRFNETNMQLIDKFSQPKLYSASAMEWLSFRLDLLSSTIFAFCLAFLVSFPSSIADPRIAGLAVTYGINLNAVQSSLISILCNLENKIISVERILQYTSIPSEAPFVIKDNQPDHSWPSFGEVHIQDLQVQYAPHLPLVLRGLTCTFTAGAKTGIVGRTGSGKTTLVQALFRLVEPLAGKILIDNINISSIGVHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALGMCQLGDEVRKKVGKLDSPVTENGENWSMGQRQL 1170
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3729 1170 Gene3D ABC transporter type 1, transmembrane domain 91 407 IPR036640 GO:0005524|GO:0016021
Psa5g3729 1170 SMART AAA_5 1052 1155 IPR003593 -
Psa5g3729 1170 SMART AAA_5 452 625 IPR003593 -
Psa5g3729 1170 CDD ABC_6TM_ABCC_D1 112 399 IPR044746 GO:0140359
Psa5g3729 1170 CDD ABCC_MRP_domain1 425 625 - -
Psa5g3729 1170 ProSitePatterns ABC transporters family signature. 550 564 IPR017871 GO:0005524
Psa5g3729 1170 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1017 1169 IPR027417 -
Psa5g3729 1170 Pfam ABC transporter 443 577 IPR003439 GO:0005524
Psa5g3729 1170 Pfam ABC transporter 1044 1169 IPR003439 GO:0005524
Psa5g3729 1170 SUPERFAMILY ABC transporter transmembrane region 706 1008 IPR036640 GO:0005524|GO:0016021
Psa5g3729 1170 CDD ABC_6TM_ABCC_D2 707 1001 IPR044726 GO:0140359
Psa5g3729 1170 Gene3D - 1009 1170 IPR027417 -
Psa5g3729 1170 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 111 391 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa5g3729 1170 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 5 655 - -
Psa5g3729 1170 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 656 1170 - -
Psa5g3729 1170 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 423 647 IPR027417 -
Psa5g3729 1170 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 425 648 IPR003439 GO:0005524
Psa5g3729 1170 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 709 989 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa5g3729 1170 Gene3D - 408 667 IPR027417 -
Psa5g3729 1170 Gene3D ABC transporter type 1, transmembrane domain 672 1007 IPR036640 GO:0005524|GO:0016021
Psa5g3729 1170 Pfam ABC transporter transmembrane region 709 951 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa5g3729 1170 Pfam ABC transporter transmembrane region 111 378 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa5g3729 1170 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 5 655 - -
Psa5g3729 1170 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 656 1170 - -
Psa5g3729 1170 SUPERFAMILY ABC transporter transmembrane region 108 404 IPR036640 GO:0005524|GO:0016021
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Psa5g3729 Psa-Chr5 294487552 294491626 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3729 425 655 Calmodulin-binding Proteins AT2G36910 29.880 1.34e-24 109
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3729 - K05666 gmx:106794105 1830.07