Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Psa5g3729 | ATGAGTAAACATGCCTCTCTTGAAGAGCCCCTTTTGAAGGATGAAGCTAGTGTAAACAACAACAATTCTGATTCCAATGAGATTTTAACAAGTTATTCAAAGGCTGGATTTTTCAGCATTCTTACTTTCTCATGGATGAGTCCACTAATAACATTAGGGAGTAAAAAGACTTTAAACCATGAAGATCTTCCACTTCTTTCTGCCAATGACACTGCCTATGGAACTTTTTCAACTTTTAGAAAAAAGCTTGAGTTGGAGTGTGGTAATGTTAGGACTGTGACAACTATTAAACTCGCTAAGGTGTTGTTGTTATCGACATGGGAAGGGATTCTTATATCTGGCTTATATGCTTTCGTGTACGTATGTGCTACTTATGTAGGACCTTACCTTATTGACAACCTTGTTCAATATCTCAATGATGAAAACAAGGCTAAAAATGAAGGCTATGTTTTGGCTACGGCGTTTGTTGCATCGAAACTTGTTGAGTGTCTTTCGCAAAGGCACTGGATGTTTACGTTCCAACAGGTTGGTGTTAGGATGCAATCAATGTTGGTGTCGATTATCTATGCTAAAGGTTTGACACTTTCGTGTAAATCAAAAGAGGGACATAGCAGCGGCGAAATCATCAACTTAATGACTGTTGATGCTGAAAGGATAGGTGAGTTTTGTTGGTATATGCATGACCTATGGATGGCTGTTCTGCAAGTTTCTTTGGCTTTGTTTATTCTTCGTAGAAGTGTCGGGGTTGCTTCAGTTGCTACTTTTGCTGCAACTGTTATCGTGATGCTGCTAAACCTTCCTATGGCATCCTTACAAGAGAAGTTCCAAGCTAATTTAATGGAGTTCAAGGATAAGAGAATGAAGGCAACGACTGAGATTCTAATGAACATGAGGATTCTTAAGCTTCAAGCGTGGGAGATGAAGTTCTTATCGAAGATCATTCAGCTTAGGAAGTTAGAGGAGACGTGGCTAAAGAAATTTCTTATTGGTACAGCTATTGTTAGATTTCTCTTCTTTAACACCCCAACGTTTGTTGCAGTGGTCACTTTCGGTGCTTGTGTTCTTCTAGGCATTCCACTTGAAACAGGAAAGATCTTATCCGCTCTTGCAACGTTCAGAATTCTTCAAATGCCTATCTATAACTTTCCCGACACACTTTCAGTGATGGCAGAAACCAAGGTTTCCCTCGATAGGGTTGTTGCTTTTCTTCGTCTAGATGATTTACAGACTGATGTAGTGGAGAAGCTTCCGCGAGGTAGTTCTGATATAGCAATTGAAATAGTAGATGGAAATTTCTCTTGGGAATTATCTTCTGTTTATACAACGTTGAAAAACATAAACCTTCGAGTTTTCCATGGTACGAGGGTCGCTGTTTGTGGCACGGTTGGATCAGGCAAGTCTAGTTTACTTTCTTGTATAATAGGCGAAATACCGAAGATATCTGGGATTTTGAAGGTGTGTGGAACAAAGGCTTTTGTTGCTCAATCAGCATGGATACAAAGCTGCAAGATCGAAGAGAACATACTATTCGGTAAAGAGATGGATAGGGAAAAATACGAGAAGGTGCTAGAAGCATGTTCGTTGAAGAAAGACCTAGAGGTTTTACCATTTGGTGATCAGACCATTATTGGAGAGAAGGGAATTAATTTGAGTGGTGGACAGAAACAAAGAGTACAAATCGCCCGTGCTCTTTACCAAGATGCCGATATATATCTACTCGACGACCCCTTTAGTGCTGTTGATGCTCATACAGGTTCCCATCTCTTTAAGGAGTGTTTGCTTGGCCTTTTGAAAACAAAAACTGTGATATACATAACACATCAAGTAGAGTTCTTACCTGACGCGGATCTGATACTTGTTATGAAAGAAGGAAGGATAACTCAATCAGGAAAATACAATGACATTCTTACATCAGGAACCAATTTTATGGAACTTGTAGGCGCACACAGAAAAGCATTGTCTTCACAAGAAGTGGAAAACATAGATGGTCGAAACGGAAAGCTAGATGAAACAATTGTTCCGAAAGGCCAACTTGTTCAAGACGAAGAACGTGAAAGGGGTAGTATCGGGTTGAAAGTGTTCTGGAAATACATAACAACAGCTTATGGAGGAGCACTTGTACCTTTCCTATTTCTTTCACAGATACTCACTGTGGTTTTACAAATTGCAAGCAATTATTGGATGGCTTTGGCAACTCCTGTTTCAGCAACTGCAGAACCTGCTATCGGAACCTTTACTCTGATGGTTGTCTATGTCTCTTTGGCAATTGGAAGTTCCTTTACCACCCTTGCCAGAGCAGTTCTTGCCGCGATAGCCGGATACAAGACAGCCACCATGCTCTTCAATCAAATGCATTTGAGCTTCATTCGCGCTCCAATGTCATTTTTCGATTCCACCCCAAGTGGAAGAATTCTTAATAGAGCTTCGACAGACCAAAGTACAGTAGATATGAGCATTTCAAACCTAGCGTGGGGATTTACCTACGATCTCGTTCAGCTCTTGGGAATTATTGCTGTGATGTCTCAAGCGGCATGGCAGGTGTTCATAGTATTGATTCCTGTCATGGCAGCATGCATATGGTATCAGCGATACTACTCGGCATCAGCACGGGAATTGGCGCGATTAACTGGTATATGTCAAGCTCCAGTTATACAACATTTTTCTGAAACAATTTCTGGATCAACAACCATAAGCTGTTTTGAGCAAGAATCAAGATTTAACGAAACGAATATGCAATTGATAGACAAATTCTCCCAGCCTAAACTATACAGTGCCAGTGCGATGGAATGGTTGAGTTTTAGATTGGATCTTTTATCCTCTACCATATTTGCTTTCTGCTTGGCTTTCTTGGTATCTTTTCCAAGTTCAATAGCCGATCCTCGCATTGCGGGATTAGCTGTGACATATGGGATTAATCTAAATGCTGTACAATCTAGTTTAATTTCGATTCTTTGCAATTTGGAGAACAAAATTATATCGGTAGAAAGAATACTTCAGTACACTTCCATCCCAAGTGAAGCGCCTTTTGTAATAAAAGACAATCAACCCGATCATTCTTGGCCCTCATTCGGAGAGGTTCATATCCAGGATTTACAGGTTCAATATGCCCCTCACTTGCCTCTTGTTTTACGCGGACTTACATGCACTTTTACTGCTGGAGCAAAAACTGGCATTGTGGGAAGAACAGGAAGTGGAAAAACAACTCTAGTGCAAGCACTTTTTAGGCTTGTTGAGCCTCTTGCAGGAAAAATATTGATCGATAACATCAACATCTCATCGATTGGAGTCCATGATTTACGGTCCAGACTAAGCATAATCCCGCAGGATCCAACAATGTTTGAAGGGACTGTAAGAAGCAACCTCGACCCGCTGGAAGAGTACACAGATGAACAAATATGGGAGGCTCTTGGTATGTGCCAACTTGGAGATGAAGTGAGAAAGAAAGTAGGAAAGCTTGATTCTCCGGTTACTGAGAATGGCGAAAACTGGAGCATGGGTCAAAGACAGTTG | 3510 | 0.408 | MSKHASLEEPLLKDEASVNNNNSDSNEILTSYSKAGFFSILTFSWMSPLITLGSKKTLNHEDLPLLSANDTAYGTFSTFRKKLELECGNVRTVTTIKLAKVLLLSTWEGILISGLYAFVYVCATYVGPYLIDNLVQYLNDENKAKNEGYVLATAFVASKLVECLSQRHWMFTFQQVGVRMQSMLVSIIYAKGLTLSCKSKEGHSSGEIINLMTVDAERIGEFCWYMHDLWMAVLQVSLALFILRRSVGVASVATFAATVIVMLLNLPMASLQEKFQANLMEFKDKRMKATTEILMNMRILKLQAWEMKFLSKIIQLRKLEETWLKKFLIGTAIVRFLFFNTPTFVAVVTFGACVLLGIPLETGKILSALATFRILQMPIYNFPDTLSVMAETKVSLDRVVAFLRLDDLQTDVVEKLPRGSSDIAIEIVDGNFSWELSSVYTTLKNINLRVFHGTRVAVCGTVGSGKSSLLSCIIGEIPKISGILKVCGTKAFVAQSAWIQSCKIEENILFGKEMDREKYEKVLEACSLKKDLEVLPFGDQTIIGEKGINLSGGQKQRVQIARALYQDADIYLLDDPFSAVDAHTGSHLFKECLLGLLKTKTVIYITHQVEFLPDADLILVMKEGRITQSGKYNDILTSGTNFMELVGAHRKALSSQEVENIDGRNGKLDETIVPKGQLVQDEERERGSIGLKVFWKYITTAYGGALVPFLFLSQILTVVLQIASNYWMALATPVSATAEPAIGTFTLMVVYVSLAIGSSFTTLARAVLAAIAGYKTATMLFNQMHLSFIRAPMSFFDSTPSGRILNRASTDQSTVDMSISNLAWGFTYDLVQLLGIIAVMSQAAWQVFIVLIPVMAACIWYQRYYSASARELARLTGICQAPVIQHFSETISGSTTISCFEQESRFNETNMQLIDKFSQPKLYSASAMEWLSFRLDLLSSTIFAFCLAFLVSFPSSIADPRIAGLAVTYGINLNAVQSSLISILCNLENKIISVERILQYTSIPSEAPFVIKDNQPDHSWPSFGEVHIQDLQVQYAPHLPLVLRGLTCTFTAGAKTGIVGRTGSGKTTLVQALFRLVEPLAGKILIDNINISSIGVHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALGMCQLGDEVRKKVGKLDSPVTENGENWSMGQRQL | 1170 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Psa5g3729 | 1170 | Gene3D | ABC transporter type 1, transmembrane domain | 91 | 407 | IPR036640 | GO:0005524|GO:0016021 | |
Psa5g3729 | 1170 | SMART | AAA_5 | 1052 | 1155 | IPR003593 | - | |
Psa5g3729 | 1170 | SMART | AAA_5 | 452 | 625 | IPR003593 | - | |
Psa5g3729 | 1170 | CDD | ABC_6TM_ABCC_D1 | 112 | 399 | IPR044746 | GO:0140359 | |
Psa5g3729 | 1170 | CDD | ABCC_MRP_domain1 | 425 | 625 | - | - | |
Psa5g3729 | 1170 | ProSitePatterns | ABC transporters family signature. | 550 | 564 | IPR017871 | GO:0005524 | |
Psa5g3729 | 1170 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1017 | 1169 | IPR027417 | - | |
Psa5g3729 | 1170 | Pfam | ABC transporter | 443 | 577 | IPR003439 | GO:0005524 | |
Psa5g3729 | 1170 | Pfam | ABC transporter | 1044 | 1169 | IPR003439 | GO:0005524 | |
Psa5g3729 | 1170 | SUPERFAMILY | ABC transporter transmembrane region | 706 | 1008 | IPR036640 | GO:0005524|GO:0016021 | |
Psa5g3729 | 1170 | CDD | ABC_6TM_ABCC_D2 | 707 | 1001 | IPR044726 | GO:0140359 | |
Psa5g3729 | 1170 | Gene3D | - | 1009 | 1170 | IPR027417 | - | |
Psa5g3729 | 1170 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 111 | 391 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Psa5g3729 | 1170 | PANTHER | ATP-BINDING CASSETTE SUB-FAMILY C | 5 | 655 | - | - | |
Psa5g3729 | 1170 | PANTHER | ATP-BINDING CASSETTE SUB-FAMILY C | 656 | 1170 | - | - | |
Psa5g3729 | 1170 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 423 | 647 | IPR027417 | - | |
Psa5g3729 | 1170 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 425 | 648 | IPR003439 | GO:0005524 | |
Psa5g3729 | 1170 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 709 | 989 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Psa5g3729 | 1170 | Gene3D | - | 408 | 667 | IPR027417 | - | |
Psa5g3729 | 1170 | Gene3D | ABC transporter type 1, transmembrane domain | 672 | 1007 | IPR036640 | GO:0005524|GO:0016021 | |
Psa5g3729 | 1170 | Pfam | ABC transporter transmembrane region | 709 | 951 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Psa5g3729 | 1170 | Pfam | ABC transporter transmembrane region | 111 | 378 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Psa5g3729 | 1170 | PANTHER | ABC TRANSPORTER C FAMILY PROTEIN | 5 | 655 | - | - | |
Psa5g3729 | 1170 | PANTHER | ABC TRANSPORTER C FAMILY PROTEIN | 656 | 1170 | - | - | |
Psa5g3729 | 1170 | SUPERFAMILY | ABC transporter transmembrane region | 108 | 404 | IPR036640 | GO:0005524|GO:0016021 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Psa5g3729 | Psa-Chr5 | 294487552 | 294491626 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Psa5g3729 | 425 | 655 | Calmodulin-binding Proteins | AT2G36910 | 29.880 | 1.34e-24 | 109 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Psa5g3729 | - | K05666 | gmx:106794105 | 1830.07 |