Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3725 ATGAAAAAAATTGGATCACATTTTGGTGTTGGTGATGACACAAAAATGAGCAACCACTCTTCTATAGCCCCTCCTTTGACTGCCATTGATAGATTCTTATGGGGTCAACGCAGCCATATCCCTCAAAACATTGATGATGAAAATTTTTGTAGCTTTGGTGCTTCAGCATATAGTTATATATGGCCTAATAACAATATCATGACTCAAGAAGCTAGCTTTGTTGATGAAGATGTGATGAATTGGACACATTCATTGTGTGTGGAGAAAGAAGATGTGATCAATGGATTAGGAAAGGGTACATCAAAAGTGGTGGCAAAAAGACCTAAGAAAGTTTCTTCTATTTCTCTGATCAAAGGACAGTGGAGTGATGAAGAAGACAGGAAATTGTTGACATTGGTGAAGCATTATGGTGTAAGAAAATGGTCTCAAATAGCTGAGAAGATGAAAGGAAGAGTTGGAAAGCAATGTAGAGAGAGATGGCAGAATCATCTTAGACCTAATATTAAAAAAGATAGTTGGAGCGAGGAAGAAGAGAAGATACTAGTAGAAAGTCATGGCAAGATGGGAAACCGTTGGGCTGAGATAGCGAAGAAAATTCCGGGAAGAACCGAGAATGCTATCAAGAATCATTGGAATGCAACTAAGAGGAGACAAAATTCAAAGAGAAAGAACAAAAGGCCTCAAACCAAAGATGGTAAACCACAATCTTCTATTCTTCAAGACTATATCAAAACCTTGACTCAAAAACCATCCATGTCAACAATCTCTGATGACCCTTCCATTGACGAATCCCGCCTTGTTTTTTCTAACATGTTTCATGAAAATTCATCGTCACCACTCATAACTGAATCTTATGATGATGAACTTCTCTTCATGCAACAGCTTTTCAAGGTGAATAATACTGTTGAGCCTGTATTTAACCAATACTATAAGAACCAATCTGCCAAAAATCAGATTCTCTCTGATGTTTCACCTAACAACATGTATCCTTACCTTTCTCCAATGCTGAATGGAATTCAAAACGAGAATAATATGGAGTTACAGTTTGGAAACATGAATCTTTCAGATGGAATGTTGGAGTTGGTTTCTTCTGCTCAGTTTTTCTAA 1107 0.3722 MKKIGSHFGVGDDTKMSNHSSIAPPLTAIDRFLWGQRSHIPQNIDDENFCSFGASAYSYIWPNNNIMTQEASFVDEDVMNWTHSLCVEKEDVINGLGKGTSKVVAKRPKKVSSISLIKGQWSDEEDRKLLTLVKHYGVRKWSQIAEKMKGRVGKQCRERWQNHLRPNIKKDSWSEEEEKILVESHGKMGNRWAEIAKKIPGRTENAIKNHWNATKRRQNSKRKNKRPQTKDGKPQSSILQDYIKTLTQKPSMSTISDDPSIDESRLVFSNMFHENSSSPLITESYDDELLFMQQLFKVNNTVEPVFNQYYKNQSAKNQILSDVSPNNMYPYLSPMLNGIQNENNMELQFGNMNLSDGMLELVSSAQFF* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3725 368 CDD SANT 121 164 IPR001005 -
Psa5g3725 368 ProSiteProfiles Myb-like domain profile. 113 164 IPR001005 -
Psa5g3725 368 MobiDBLite consensus disorder prediction 214 228 - -
Psa5g3725 368 MobiDBLite consensus disorder prediction 203 237 - -
Psa5g3725 368 PANTHER MYB DOMAIN PROTEIN 64-RELATED 111 301 - -
Psa5g3725 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 113 168 IPR017930 -
Psa5g3725 368 SUPERFAMILY Homeodomain-like 115 211 IPR009057 -
Psa5g3725 368 Pfam Myb-like DNA-binding domain 121 179 - -
Psa5g3725 368 Gene3D - 171 239 - -
Psa5g3725 368 ProSiteProfiles Myb-like domain profile. 165 215 IPR001005 -
Psa5g3725 368 SMART sant 169 217 IPR001005 -
Psa5g3725 368 SMART sant 117 166 IPR001005 -
Psa5g3725 368 CDD SANT 172 215 IPR001005 -
Psa5g3725 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 169 219 IPR017930 -
Psa5g3725 368 Gene3D - 117 169 - -
Psa5g3725 368 PANTHER MYB PROTEIN-RELATED 111 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3725 Psa-Chr5 294424045 294425450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3725 23 296 MYB Transcription Factor Family AT5G58850 46.382 2.24e-73 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa5g3725 Myb_DNA-bind_6 1.8e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3725 K09422 - gmx:100786295 355.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3725 5 294424045 294425450 Psa5g3725 5 294424045 294425450 ECH