Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3697 ATGACTTTCATGTGGGACAATGTTTGTTCTTGCATTGTTATTCTTGTGCTATTTTGGTTCATTGAATCTATTACTCTTAGTTTTGTTGGTGTTTGCGGATCTAATTTACAATTGGGTTCGTATTCGTCACATTTGATTGAAATCAACTCAATGTTAGTACAATCGATCGAGGTGCAACAAAACAATAGGCCAAAATCTGGTATGATGCTTTATGGATTTGATGTTGCTCCTCCACTAGATGGCAAAATAAATTGGACTGAGATGTATGATGTATCCATTCCACCAAAATCTCAAAAGGAATGGATATTCTACCTGAATAAAGACTCTCAGTTAGATGTTTTTGTTAGTGTTAATTCTTTAGTAGCACCTTTAATCCTTGTAATATTAAAAGGTAGAGAAAGTATAGATGAGTGGAAAGATGATCCAATATCCCCTGACGCAACAATGTATTGGAATAATATCTATGGAAGTAGTAAGGTTACACAGAAAATATCAGAATCGTCTACTTATTATGTGGCTATTGGCAATATCAACCATCAAAATGTTAAGGTACAATTGAAGTTCAATGTGAATGCACTTCTCTACAATACAACCAACTCTTATAAAAGATGTTCTCTAGATAACAATTCATGTAAAATAAACACAGCTCTTTCAGCAAACATAGCACTATTAACCACTCCAGGTCCTAAAGAGGGTGTAACTAACCAGGAATGGTTTGATGTGAATGTGTCTTATGAACCAAGATGGATCATGTATTTTATAGGAATAGGTGTGATGACTGTGATAATCCTATGTGCATTGGAATCGTACCAAATGTACCAAACAAACATTGAAGAAAATGTAAGGTTCCGATTCCAACGAGTGGAAGTGAATTCAGAAAGAGCTCCATTGTTGTCTAGAAAAGACACTGATGTTACTAGTTGGAGTTCATCTTATGATTCTTTCTCAAGTGATGAAGAAAATTCTAGTGAAGGAAAGTCAATAATAGAAGGGGAAACTAGCAATAATGATCTTAGGCGTTTGTGTGTTATTTGCTTCGATGCAAGAAGGGATTGTTTTTTTCTCCCATGTGGCCATTTTGCAACATGCTATACTTGTGGGACAAGAATTGCTGCAGAAACTTGCACTTGTCCCATTTGTAGAAGGAAAATGAAGAAATTAAAAAAGATTTATATTGTGTAA 1182 0.3477 MTFMWDNVCSCIVILVLFWFIESITLSFVGVCGSNLQLGSYSSHLIEINSMLVQSIEVQQNNRPKSGMMLYGFDVAPPLDGKINWTEMYDVSIPPKSQKEWIFYLNKDSQLDVFVSVNSLVAPLILVILKGRESIDEWKDDPISPDATMYWNNIYGSSKVTQKISESSTYYVAIGNINHQNVKVQLKFNVNALLYNTTNSYKRCSLDNNSCKINTALSANIALLTTPGPKEGVTNQEWFDVNVSYEPRWIMYFIGIGVMTVIILCALESYQMYQTNIEENVRFRFQRVEVNSERAPLLSRKDTDVTSWSSSYDSFSSDEENSSEGKSIIEGETSNNDLRRLCVICFDARRDCFFLPCGHFATCYTCGTRIAAETCTCPICRRKMKKLKKIYIV* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3697 393 Pfam Domain of unknown function (DUF4792) 67 134 IPR032008 -
Psa5g3697 393 PANTHER OS05G0521000 PROTEIN 3 393 - -
Psa5g3697 393 SUPERFAMILY RING/U-box 341 386 - -
Psa5g3697 393 ProSiteProfiles Zinc finger RING-type profile. 342 381 IPR001841 -
Psa5g3697 393 Pfam Zinc finger, C3HC4 type (RING finger) 340 386 - -
Psa5g3697 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 316 393 IPR013083 -
Psa5g3697 393 SMART ring_2 342 380 IPR001841 -
Psa5g3697 393 Pfam Domain of unknown function (DUF4793) 160 265 IPR032010 -
Psa5g3697 393 PANTHER OS05G0521000 PROTEIN 3 393 IPR044586 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3697 Psa-Chr5 290200307 290204017 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3697 342 390 C3H Transcription Factor Family AT3G06140 36.735 3.80e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3697 - - mtr:MTR_3g463920 452.981