Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3696 ATGGCAAAAACGACGTCGTTGCTTCTATGTGCACTATGTCTCTTTGCTACTCTATCTCTTATCCAGGCAAAGAAGCCGAAGGAGGATTTGAAGGAAGTGACTCAAAAGGTTTTCTTTGATGTTGAGATTGATGGAAAGTCTGCAGGTCGTATTGTAATTGGACTTTTTGGGAAGGCAGTTCCAAAAACTGCAGAAAACTTCCGAGCTCTTTGCACAGGGGAAAAGGGAGTTGGTAAAAGTGGAAAGCCCCTTCATTACAAAGGTAGCTCATTCCATAGAATTATACCTAGCTTTATGATCCAAGGAGGTGATTTTACACACGGCAATGGTATGGGCGGAGAATCAATTTACGGAGAGAAGTTTGCTGATGAGAACTTCAAGCTAAAGCATACCGGACCAGGATTTTTATCAATGGCAAATGCTGGTCCTGATACCAATGGTTCACAATTTTTCATTACAACTGTAACAACTAGCTGGTTGGATGGAAGACATGTTGTTTTTGGAAAGGTGCTTTCAGGAATGGATGTCGTTTACAAGGTTGAAGCTGAAGGAAATCAAAGTGGAACTCCTAAGAGCAAGGTTGTGATTGCTGATAGTGGTGAACTACCTCTGTAA 615 0.4163 MAKTTSLLLCALCLFATLSLIQAKKPKEDLKEVTQKVFFDVEIDGKSAGRIVIGLFGKAVPKTAENFRALCTGEKGVGKSGKPLHYKGSSFHRIIPSFMIQGGDFTHGNGMGGESIYGEKFADENFKLKHTGPGFLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGNQSGTPKSKVVIADSGELPL* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3696 204 Gene3D - 23 203 IPR029000 -
Psa5g3696 204 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 12 204 - -
Psa5g3696 204 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 38 201 IPR002130 GO:0000413|GO:0003755
Psa5g3696 204 SUPERFAMILY Cyclophilin-like 33 202 IPR029000 -
Psa5g3696 204 CDD cyclophilin_ABH_like 36 200 - -
Psa5g3696 204 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 86 103 IPR020892 GO:0003755|GO:0006457
Psa5g3696 204 PIRSF Peptidylpro_ismrse 19 203 IPR024936 GO:0003755
Psa5g3696 204 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 40 199 IPR002130 GO:0000413|GO:0003755
Psa5g3696 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 55 70 IPR002130 GO:0000413|GO:0003755
Psa5g3696 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 91 103 IPR002130 GO:0000413|GO:0003755
Psa5g3696 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 134 149 IPR002130 GO:0000413|GO:0003755
Psa5g3696 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 149 161 IPR002130 GO:0000413|GO:0003755
Psa5g3696 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 162 177 IPR002130 GO:0000413|GO:0003755
Psa5g3696 204 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-1 12 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3696 Psa-Chr5 290070295 290073973 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3696 49 181 U-box Gene Family AT5G67530 47.015 2.17e-28 109