Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3680 ATGGGAAAGAGTTTGTTTCAAGAATCTCTCAAAGCTCTGGAAGCTGATATTCAGTATGCTAATACACTGGCATTAGAGCATCCAAGGGATAAAGAAGGAGGATGCTTTCAGATGAGGCTATCATACAGTCCGGTGGCTCCACTTTTTCTCTCTCTTGTTCAATGGACTGATTACCGACTTGCCGGTGCTCTTGGTTTGCTCAGAATTCTAATTTTTGTGACATATGGAAATGGGAAAACTACTATTTCAATATATGAAAGGAAAGCAAGCATAAGACAATTTTATTCGGTTATATTTCCTGCTCTATTGCAACTTCAGAAAGGCATCACAGATTTGGAAGAAAGGAAACAGAAAGAAGTATATGCTATTAGATACCAAAAGAAGACTGATTTCAAAGATAGAAAAGAATCTGAAATTGACATTGAAAGAGAACAAGAATGTGGAGTTTGCTTGGAAGTGAAAGCTAAAGTTGTGCTGCCTAATTGCTGCCACCAAATGTGCTTTGAGTGTTACACAGACTGGTGTCTTAGGTCTCAGTCTTGCCCCTTTTGCCGGGATAGCCTGAAGAGAGTAAACTCTGAGGACCTTTGGATTTACACAGACACAAGTGATATTGTGGATGTTGGAACAATTTTCAAAGAGAATTGCTCCACCCACTTGATAAGATTCCATCTTTTCATGATATTTTGA 690 0.387 MGKSLFQESLKALEADIQYANTLALEHPRDKEGGCFQMRLSYSPVAPLFLSLVQWTDYRLAGALGLLRILIFVTYGNGKTTISIYERKASIRQFYSVIFPALLQLQKGITDLEERKQKEVYAIRYQKKTDFKDRKESEIDIEREQECGVCLEVKAKVVLPNCCHQMCFECYTDWCLRSQSCPFCRDSLKRVNSEDLWIYTDTSDIVDVGTIFKENCSTHLIRFHLFMIF* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3680 229 Pfam Zinc finger, C3HC4 type (RING finger) 144 190 - -
Psa5g3680 229 ProSitePatterns Zinc finger RING-type signature. 162 171 IPR017907 -
Psa5g3680 229 SUPERFAMILY RING/U-box 134 190 - -
Psa5g3680 229 ProSiteProfiles Zinc finger RING-type profile. 147 185 IPR001841 -
Psa5g3680 229 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 219 - -
Psa5g3680 229 SMART ring_2 147 184 IPR001841 -
Psa5g3680 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 196 IPR013083 -
Psa5g3680 229 PANTHER RING FINGER PROTEIN 41, 151 1 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3680 Psa-Chr5 289528297 289532280 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3680 145 215 RAD5 or RAD16-like Gene Family AT5G43530 44.000 2.71e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3680 - - gmx:100808567 384.03