Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3673 ATGTCAACATTGGTTTCTGGTGTTTCTCATGTTTGTGGTTTAACAACTCTTGATGGAGTTTTGGTTTGTAAAGGGAAGAACAACAACAATGATTCTGGATTATGTACTATTCTTTATTTTCTTATGATTGGTGCAAGAAAATTGGTAACGGCGAAAATCGATAATTCGGTTCAACCTACAAGTAGTGAATCTGATGATGATGATGCTTATGTTGATATAGCTCCAAGTCATAACAATGGAACAACAATAACAACAACAGCATTAAGATCTTTTTCGAGCAAACGACATAGCTCGAGTAGGTTAAGAAGTGGTTCGTCATCGAAGCAACTAGACAGAACCGAGAGTTTCACGTTTTGGGAATTGGTTTCAGCTAGTGACAATTTCTCAGTGGAAAACAAAATCGGTGCTGGTAGTTTTGGATGTGTTTACAAAGGGAGGTTACTAGACGGCCGCGAAGTCGCGATTAAACGAGGCGATACAACATGCGCGAAGAAGAAGAAATTCCAAGAGAAAGAAACATCTTTTGATTCTGAGATTACATTGTTATCAAGGCTTCACCACAAGCATTTGGTGAGACTAATTGGTTTCTGCGAAGAGAACGACGAGAGGCTTTTGGTTTACGAGTACATGAGCAACGGATCACTTCATGATCACCTGCATGATAAGAGCAATGTCGAGAAAAACAGCAGCATTATGAATTCATGGAAAATGAGAATCAAAGTCGCGTTAGACGCTGCAAGAGGGATCGAGTACATTCATAACTACGCGGTTCCGCTGATTATTCATCGAGACATTAAATCCTCGAACATACTTCTCGATTCAAAATGGAACGCTAGAGTTTCCGACTTCGGGTTATCATTAATCTGGCAAGAAACCGAACTAGAACTGATGTCGGATACGAAAGCGGTTGGAACGGTTGGTTACATAGATCCTGAGTACTATGTATCGAATGTTTTAACAACAAAAAGTGATGTTTATGGTTTAGGTGTTGTGATGTTGGAGCTTTTGACAGGTAAAAGAGCAGTGTTTAAAACGGAAGACGGTTCGAGTCCTATCGGCGTGGTGGAGTATGCAGGAGCAAAGATAGGTTCAGGAGAGGTTTGGAATTTGTTGGATGATAGAGTTGGAATACCTGAAGTGAATGAAGTTGAATCTGTTGAGATTATGGCTTATACTGCTATGCATTGTGTGAATTTGGAGGGGAAAGAAAGGCCTAATATGGTTGATATTGTTGCTAATTTGGAAAGAGCTTTGTCTTTTCTTGAGGGTAGTCCTGGTAGTTTTTCTATGTCTTCTTTCTCTGCTACTCTTACATGA 1317 0.3986 MSTLVSGVSHVCGLTTLDGVLVCKGKNNNNDSGLCTILYFLMIGARKLVTAKIDNSVQPTSSESDDDDAYVDIAPSHNNGTTITTTALRSFSSKRHSSSRLRSGSSSKQLDRTESFTFWELVSASDNFSVENKIGAGSFGCVYKGRLLDGREVAIKRGDTTCAKKKKFQEKETSFDSEITLLSRLHHKHLVRLIGFCEENDERLLVYEYMSNGSLHDHLHDKSNVEKNSSIMNSWKMRIKVALDAARGIEYIHNYAVPLIIHRDIKSSNILLDSKWNARVSDFGLSLIWQETELELMSDTKAVGTVGYIDPEYYVSNVLTTKSDVYGLGVVMLELLTGKRAVFKTEDGSSPIGVVEYAGAKIGSGEVWNLLDDRVGIPEVNEVESVEIMAYTAMHCVNLEGKERPNMVDIVANLERALSFLEGSPGSFSMSSFSATLT* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3673 438 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 1 30 - -
Psa5g3673 438 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 32 433 - -
Psa5g3673 438 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Psa5g3673 438 SMART serkin_6 128 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g3673 438 SUPERFAMILY Protein kinase-like (PK-like) 104 414 IPR011009 -
Psa5g3673 438 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 1 30 IPR044815 GO:0004674
Psa5g3673 438 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 32 433 IPR044815 GO:0004674
Psa5g3673 438 CDD STKc_IRAK 134 416 - -
Psa5g3673 438 ProSitePatterns Protein kinases ATP-binding region signature. 134 165 IPR017441 GO:0005524
Psa5g3673 438 Pfam Protein kinase domain 129 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g3673 438 ProSiteProfiles Protein kinase domain profile. 128 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g3673 438 Gene3D Transferase(Phosphotransferase) domain 1 210 424 - -
Psa5g3673 438 Gene3D Phosphorylase Kinase; domain 1 99 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3673 Psa-Chr5 289278781 289281390 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3673 32 429 Receptor kinase-like Gene Family AT3G55950 59.314 4.86e-148 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Psa5g3673 Pkinase 1.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3673 - - gmx:100802403 582.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3673 5 289278781 289281390 Psa5g3673 5 289278781 289281390 ECH