Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3664 ATGTGCAACTGTTCCAATAGAAAGCCCTCTCAATCTGGTTTGATTAGGGATCATGAATATGGAAGACCAGAAGAACTGCATCATAAGATTTCTGATTTGCTTCTGTTTTCAGCCACAGATGATGTAATTGCTTTCAGAGAGGCTGTTGAAAAAGACGATCATGAGGTCGATGAAGTAGGGTTGTGGTATGGAAGGAGGGTTGGCTCAAAGGAAATGGGATATGAAGAGAGGACACCTCTTATGATTGCTTCCTTATTTGGAAGCAAAGCTGTATTGTCTTATATTCTCGAAACTGGTCGTGTCAATGTTAACCAAGCATGCGGATCGGATAGGGCTACTGCGCTTCATTGTGCTGTTTCTGGTTGTTCTGCTGAGGTTATCAAGCTTTTGCTTGATGCATCTGCAGATGTTAATTCTGTTGATGCCAATGGTAAGCGGTGCATTGACTTGATTGTCATGATGCCTAATAGTATGTCCGGTTCCAAGAAGAGGTTACTACAAGCCATACTACAAGGTACTGATGATGACTGTGATTTCCTTAAGGAAGTGTGTTTCCAAATGGAGAAGCAGCAACAAGATATAGGTACACCTCGAATTGAGAAGAAAGATTATCCGATTGATCTACCATTACCTGACATAAATAATGAGATATATAGTACAGATGAATTTAGGATGTTTATATTCAAAGTGAAACCTTGTTCAAGGGCTTATTCTCATGATTGGACGGAGTGTCCCTTTGTTCATCCAAGGGAAAACGCAAGGCGCCGTGATCCGACGTTATATCAGTACACATGTGTCCCTTGTCCTGAGTTTCGGAAGGGATCATGCAGTAAAGGGGATGCTTGTGAATATGCACATGGTATTTTTGAGTGCTGGCTTCATCCTGCTCAATACAGAACAAGGCTTTGCAAGGATGAGACCGAATGCACCCGAAGAGTCTGCTTTTTTGCACACAAACCCGAGGAGCTTCGTCCGTTGTATGCTTCTACTGGTTCTGCTTTACCTTCACCTACATCATATTCAAATTCACCTAGTGCTTCTTCAACGGATTCTTTAACATTGAACTCACCGTCCAGTTTCATACAATCCATGTCAACACTGCCTTTGACTCCATCTGCAGCGTCTTCTCCTGCAGGTGGAACCATGTGGCCGTCTCAGTCTCATGTTGCAGTCCCTAATACTAAGTTTCTCGAACTTGAAAATCTCCTTATGCAGAAGCTAATGATTGAAGAGATGACAACAGGTCTTTCATTCACTTCAAATAGGCTTACAGGTGTGAATCCTGCTAACCTCGAAGACATTCTCGGTTCTCAGATACAATCTCCAACATCAACTCATGTGCATCCGAATGTGACTCAGCAACTTTGGGGCTTTTCTTCTGACCTTACCGATTCAAATGTGATTGGATCACCACAGATCACTGTGCATCCGTCTATAAATTTAAAAAATGATGCCTTGTCGAAGCGGAGCCAGATCTTTATCGAGCGCAGCAGCATGGCGAGCTTTAGTTCTGAGCTTCCTTATGCTACCTCGGTTGCTATGGAGCCATATACTAACTTCTCTGGTTGGGGCTCCCCTGATGGAAAATTAGACTGGTCCATCCGTGGCGATGAACTGAATAAAATGAGAAAGTCTTATTCTTTCGGCTTTGAGAACCAAAGTAGCAATAATTCAACAATGGTTGCAGAAAATGCTGATGAGCAAAGGAATGATGGGTTAATTCACTAG 1728 0.4265 MCNCSNRKPSQSGLIRDHEYGRPEELHHKISDLLLFSATDDVIAFREAVEKDDHEVDEVGLWYGRRVGSKEMGYEERTPLMIASLFGSKAVLSYILETGRVNVNQACGSDRATALHCAVSGCSAEVIKLLLDASADVNSVDANGKRCIDLIVMMPNSMSGSKKRLLQAILQGTDDDCDFLKEVCFQMEKQQQDIGTPRIEKKDYPIDLPLPDINNEIYSTDEFRMFIFKVKPCSRAYSHDWTECPFVHPRENARRRDPTLYQYTCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDETECTRRVCFFAHKPEELRPLYASTGSALPSPTSYSNSPSASSTDSLTLNSPSSFIQSMSTLPLTPSAASSPAGGTMWPSQSHVAVPNTKFLELENLLMQKLMIEEMTTGLSFTSNRLTGVNPANLEDILGSQIQSPTSTHVHPNVTQQLWGFSSDLTDSNVIGSPQITVHPSINLKNDALSKRSQIFIERSSMASFSSELPYATSVAMEPYTNFSGWGSPDGKLDWSIRGDELNKMRKSYSFGFENQSSNNSTMVAENADEQRNDGLIH* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3664 575 PANTHER UNKEMPT FAMILY MEMBER 21 564 IPR045234 -
Psa5g3664 575 MobiDBLite consensus disorder prediction 556 575 - -
Psa5g3664 575 ProSiteProfiles Ankyrin repeat profile. 110 142 IPR002110 GO:0005515
Psa5g3664 575 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 267 287 IPR000571 GO:0046872
Psa5g3664 575 Gene3D - 34 171 IPR036770 -
Psa5g3664 575 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 21 564 - -
Psa5g3664 575 Pfam Ankyrin repeats (3 copies) 72 141 IPR002110 GO:0005515
Psa5g3664 575 ProSiteProfiles Zinc finger C3H1-type profile. 262 289 IPR000571 GO:0046872
Psa5g3664 575 ProSiteProfiles Ankyrin repeat region circular profile. 110 141 - -
Psa5g3664 575 SUPERFAMILY Ankyrin repeat 44 155 IPR036770 -
Psa5g3664 575 Gene3D - 262 325 - -
Psa5g3664 575 SMART ANK_2a 110 139 IPR002110 GO:0005515
Psa5g3664 575 SMART ANK_2a 75 105 IPR002110 GO:0005515
Psa5g3664 575 SMART c3hfinal6 262 288 IPR000571 GO:0046872
Psa5g3664 575 SMART c3hfinal6 297 320 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3664 Psa-Chr5 288612807 288614704 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3664 25 549 C2H2 Transcription Factor Family AT5G12850 39.344 3.01e-125 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa5g3664 Ank_2 1.9e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3664 - - mtr:MTR_1g075890 775.778