Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3662 ATGTGCAACGGTTCGAATAGAAAGCCCTCTCAAACTGGTTTGATTAGGGATCATGAATATGGAAGACCAGAAGAACTACAGCACGAGGTTTCTGATTTGCTTCTGTTTTCAGCCACAGATGATTTAATTGCTTTCAGAGAGGCTGTTGAAAAAGACGATCACGAGGTCGATGAAGTAGGGTTGTGGTATGGAAGGAGGGTTGGCTCAAAGGAAATGGGATATGAAGAGAGGACACCTCTTATGGTTGCTTCCTTATTTGGAAGCAAGGCTGTATTGTCTTATATTCTTGAAACTGGTCGTGTCAATGTTAACCAAGCATGCGGATCGGATAGGGCTACTGCGCTTCATTGTGCTGTTTCTGGTTGTTCTGCTGCTTCTGCTGAAGTTATCAAGCTTTTGCTTGTTGCATCTGCGGATGTTGGTTCTGTTGACGCGAACGGTAACCGGTGCAGTGACTTGATTGTCATGATGTCTAATAGTATCTCCGGTTCAAGGAAGACAAAACTACAAGCCATACTAGAAGGTATCGATGATGTTGATGATGACAATGAATTCCAAAAGGAGAAGCAGCAAGAAGATATCGGTACACCTCAAATCGAGAAGAAAAATTATCCGATTGATCTACCATTACCTGACATAAATAATGGAATATATAGTACAGATGAATTTAGGATGTTTATATTCAAAGTGAAGCCTTGTTCAAGGGCTTATTCTCATGATTGGACGGAGTGTCCCTTTGTTCATCCAGGGGAAAACGCAAGGCGCCGTGATCCGATGTCATATCAATACACCTGTGTCCCTTGTCCTGAGTTTCGGAAGGGATCATGCAGTAAAGGGGATGCTTGTGAATATGCACATGGTATTTTTGAGTGCTGGCTTCATCCTGCTCAATACAGAACAAGACTTTGTAAGGATGAGACCGAATGCAACCGAAGAGTCTGCTTTTTTGCACACAAACCCGAGGAACTTCGCCCGTTGTATGCTTCTACTGGTTCTGCTTTACCTTCAGCTACATCATATTCAAATTCACCTAGTGCTTCTTCAACGGATTCTTTAACATTGAACTCACCGTCCAGTTTCATACAATCCATGTCGACACTGCCTTTGACTCCATCTGCAGCGTCTTCTCCTGCAGGTGGAACCATGTGGCCGTCTCAGTCTCATGTTGCAGTCCCTACGCTTCAGATGCCGAGAAGCAAATTCAAAACTGCATTGAATGCTAGAGATAATACTAAGTTTCTCGAACTTGAAAATCTCCTTATGCAGAAGCTAATGATTGAAGAGATGACAACAGGTCTTTCATTCACTTCAAATAGGCTTGCAGGTGTAAATCCTGCTAACCTCAAAGACATTCTCGGTTCTCAGATACAATCTCCAACATCAACTCATGTGCATCCGAATGTGACTCAGCAACTTTGGGGCTTTTCTTCTGATCTTACCGATTCAAATGTGATTGGATCACCACAGATCACTGTGCATCCGTCTATAAATTTAAAAAATGATGCCTTGTCGAAGCGGAGCCAGATCTTTATCGAGCGCAGCAGCATGGCGAGCTTTTAG 1560 0.4308 MCNGSNRKPSQTGLIRDHEYGRPEELQHEVSDLLLFSATDDLIAFREAVEKDDHEVDEVGLWYGRRVGSKEMGYEERTPLMVASLFGSKAVLSYILETGRVNVNQACGSDRATALHCAVSGCSAASAEVIKLLLVASADVGSVDANGNRCSDLIVMMSNSISGSRKTKLQAILEGIDDVDDDNEFQKEKQQEDIGTPQIEKKNYPIDLPLPDINNGIYSTDEFRMFIFKVKPCSRAYSHDWTECPFVHPGENARRRDPMSYQYTCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDETECNRRVCFFAHKPEELRPLYASTGSALPSATSYSNSPSASSTDSLTLNSPSSFIQSMSTLPLTPSAASSPAGGTMWPSQSHVAVPTLQMPRSKFKTALNARDNTKFLELENLLMQKLMIEEMTTGLSFTSNRLAGVNPANLKDILGSQIQSPTSTHVHPNVTQQLWGFSSDLTDSNVIGSPQITVHPSINLKNDALSKRSQIFIERSSMASF* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3662 519 Gene3D - 37 179 IPR036770 -
Psa5g3662 519 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 267 287 IPR000571 GO:0046872
Psa5g3662 519 SMART ANK_2a 110 142 IPR002110 GO:0005515
Psa5g3662 519 SMART ANK_2a 75 105 IPR002110 GO:0005515
Psa5g3662 519 Pfam Ankyrin repeat 113 144 IPR002110 GO:0005515
Psa5g3662 519 Gene3D - 262 325 - -
Psa5g3662 519 ProSiteProfiles Zinc finger C3H1-type profile. 262 289 IPR000571 GO:0046872
Psa5g3662 519 SUPERFAMILY Ankyrin repeat 43 157 IPR036770 -
Psa5g3662 519 PANTHER UNKEMPT FAMILY MEMBER 21 517 IPR045234 -
Psa5g3662 519 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 21 517 - -
Psa5g3662 519 SMART c3hfinal6 297 320 IPR000571 GO:0046872
Psa5g3662 519 SMART c3hfinal6 262 288 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3662 Psa-Chr5 288594672 288597666 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3662 25 459 C2H2 Transcription Factor Family AT5G12850 46.444 7.40e-130 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa5g3662 Ank 0.0071 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3662 - - mtr:MTR_1g075890 741.11