Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3617 ATGTGCAACGGTTCGAATAGAAAACCCTCTCAAACTGGTTTGATTAGGGATCATGAATATGAAAGACAAGAAGAACTGCAGCATGAGGTTTCTGATTTGCTTCTGTTTTCAGCCACAGATGATGTTATAGCTTTTAAAGAGGCGGTTGAAAAACGCAACTATGATGTCAATGAGGTAGGCTTGTGGAGGATTGGCTCAAAGGAAATGGGATATGAAGAGAGGACACCTCTCATGATTGCTTCCTTATTTGGAAGCAAGGCTGTATTGTTTTATATTCTCGAAACCGGCCATGTCGATGTTAACCAAGCGTGCGGATCGGATAGGGCTACTGCTCTTCATTGTGCTGTTTCTGGTTGTTCTGCTGCTTCTTCTGAGGTTATCAAGCTTTTGCTTGATGCATCTGCAGATGTTAATTCTGTTGATGCGAATGGTAACCGGTGCATTGACTTGATTGTCATGATGCCTAATAGTATGTCCGGTTCCAAGAAGAGGTTACTACAAGCCATACTAGAAGGTACTGATGATGACTGTGATTTCCTTAAGGAAGTGTATTTCCAAATGGAGAAGCAGCAACAAGATATCGGTACACCTCGAATTGAGAAGAAAGATTATCCGATTGATCTATCCCTACCCGACATAAATAATGGAATATATAGTACGGATGAGTTTAGGATGTTTATATTCAAAGTGAAGCCTTGTTCAAGGGCTTATTCTCATGATTGGACGGAGTGTCCCTTTGTTCATCCAGGGGAAAACGCAAGGCGCCGTGATCCGATGACATATCAATACACATGTGTCCCTTGTCCTGAGTTTCGGAAGGGATCATGCAGTAAAGGGGATGCTTGTGAATATGCACATGGGGATGCTTGTGAATATGCACATGGTATTTTTGAGTGCTGGCTTCATCCTGCTCAATACAGAACAAGGCTTTGCAAGGATGAGACCGAATGCACCCGGAGAGTCTGCTTTTTTGCACACAAAACCGAGGAGCTTCGCCCATTGTATGCTTCTACTGGTTCTGCTTTGCCTTCCCCTATATCCTATTCCAATTCACCTACTGCTTCTTCCATGGATTATTTCACATTGAGCTCTCCGTCCAGTTCGACACAATCCACGTCGACACCGCCTTTGACTCCATCTGCAGCGTCATCTTCTGTAGGTGGAACCATGTGGCCGACTCAGTCTCATGCTGCAGTTCCTACACTTCAGTTGCCGAGAAGCAGATTGAAAACTGCATTGAACGCTAGAGATGATACTGAATTTCTCGAACATGAAAATCGCCTTATGCAGAAGCTAATGATTGAAGAGATGACAGGTCTTTCATTCCCTTCAAATAGGCTTGCAGGACTGAGTCCTTCTAACCTCGAAGACATTCTCGGTTCTCAGATACAATCTGCAACATCAGTTCATGTGCATCCGAATGTGACGCAGCAACTTTGGGGATTTTCTTCTGACCTTACCAATTCAAATGTGATTGGATCACCACAGATCACTGTTTATCCGTCTATGAATTCAAAAAATGACGCCCTGTTGAAACGGAGCCAGAGCTTTATCGAGCACAGCAGCATGGCGAGCTTTAGTTCTGAGCTTCCTTCTGCTAACTCAGTTGTTATGGAGCCATATACTAACATCTCTGGTTGGGGTTCCCCTGATGGAAAACTAGACTGGTCCATCCCATATACTAACATCTCTGGTTGGGGTTCCCCTGATGGAAAACTAGACTGGTCCATCCGTGAGGATGAACTGAATAAGATGAGAAAGTCTTATTCTTTTGGCTTTCGAAACCAACTCAGCAATTCAAGAACGGTTGCACAAAATGCTGATGAGGAAGACCAATTAATAAGCCAGGAGTCATGGGTTAATTCACTAGTGAAGGATGCACCAATATTGCAATGGGATCAATATTGA 1908 0.4361 MCNGSNRKPSQTGLIRDHEYERQEELQHEVSDLLLFSATDDVIAFKEAVEKRNYDVNEVGLWRIGSKEMGYEERTPLMIASLFGSKAVLFYILETGHVDVNQACGSDRATALHCAVSGCSAASSEVIKLLLDASADVNSVDANGNRCIDLIVMMPNSMSGSKKRLLQAILEGTDDDCDFLKEVYFQMEKQQQDIGTPRIEKKDYPIDLSLPDINNGIYSTDEFRMFIFKVKPCSRAYSHDWTECPFVHPGENARRRDPMTYQYTCVPCPEFRKGSCSKGDACEYAHGDACEYAHGIFECWLHPAQYRTRLCKDETECTRRVCFFAHKTEELRPLYASTGSALPSPISYSNSPTASSMDYFTLSSPSSSTQSTSTPPLTPSAASSSVGGTMWPTQSHAAVPTLQLPRSRLKTALNARDDTEFLEHENRLMQKLMIEEMTGLSFPSNRLAGLSPSNLEDILGSQIQSATSVHVHPNVTQQLWGFSSDLTNSNVIGSPQITVYPSMNSKNDALLKRSQSFIEHSSMASFSSELPSANSVVMEPYTNISGWGSPDGKLDWSIPYTNISGWGSPDGKLDWSIREDELNKMRKSYSFGFRNQLSNSRTVAQNADEEDQLISQESWVNSLVKDAPILQWDQY* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3617 635 ProSiteProfiles Zinc finger C3H1-type profile. 262 289 IPR000571 GO:0046872
Psa5g3617 635 PANTHER UNKEMPT FAMILY MEMBER 287 559 IPR045234 -
Psa5g3617 635 PANTHER UNKEMPT FAMILY MEMBER 562 628 IPR045234 -
Psa5g3617 635 PANTHER UNKEMPT FAMILY MEMBER 18 287 IPR045234 -
Psa5g3617 635 SMART c3hfinal6 262 288 IPR000571 GO:0046872
Psa5g3617 635 SMART c3hfinal6 305 328 IPR000571 GO:0046872
Psa5g3617 635 MobiDBLite consensus disorder prediction 366 388 - -
Psa5g3617 635 Gene3D - 27 171 IPR036770 -
Psa5g3617 635 Gene3D - 227 289 - -
Psa5g3617 635 SUPERFAMILY Ankyrin repeat 51 155 IPR036770 -
Psa5g3617 635 Pfam Ankyrin repeats (3 copies) 65 141 IPR002110 GO:0005515
Psa5g3617 635 SMART ANK_2a 72 102 IPR002110 GO:0005515
Psa5g3617 635 SMART ANK_2a 107 139 IPR002110 GO:0005515
Psa5g3617 635 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 267 287 IPR000571 GO:0046872
Psa5g3617 635 ProSiteProfiles Ankyrin repeat profile. 107 142 IPR002110 GO:0005515
Psa5g3617 635 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 18 287 - -
Psa5g3617 635 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 287 559 - -
Psa5g3617 635 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 562 628 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3617 Psa-Chr5 284276276 284278427 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3617 25 627 C2H2 Transcription Factor Family AT5G12850 39.759 7.42e-132 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa5g3617 Ank_2 1.1e-06 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3617 - - mtr:MTR_1g075890 796.964