Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3616 ATGTGCAACGGATCAAATAGAAAACTCTCTCAAACTGGTTTGATTAGGGGTCATGAATATGAAAGAGAAGAAGAATTGCAGCATGAGGTTTCTGATTTGCTTGTGTTTTCAGCCACAGATGATGTAATTGCTTTTAAAGAGGCTGTTGAAAAAGACAATCATGATGTCAATGAGGTAGGCTTGTGGAGGATTGGCTCAAAGGAAATGGGATATGAAGAGAGGACACCTCTCATGATTGCTTCCTTATTTGGAAGCAAGGCTGTATTGTTTTATATTCTCGAAACCGGTCGTGTTGATGTTAACCAAGGGTGCGGATCGGATAGGGCTACTGCTCTTCATTGTGCCGTTTCTGGTTGTTCTGCTGCTTCTTCTGAAGTTATCAAGCTTTTGCTTGATGCATCTGCAGATGTTAATTCTGTTGATGCGAATGGTAACCGGTGCATTGACTTGATTGTCATGATGCCTAATAGTATCTCCGGTTCCAAGAAGAGATTACTACAAGCCATACTAGAAGGTACTGATGATGACTGTGATTTCCTTAAGGAAGTGTGTTTCCAAATGGAGAAGCAGCAACAAGATATCGGTACACCTCGAACTGAGAAGAAAGATTATCCGATTGATCTATCCCTACCCGACATAAATAATGGAATATATAGTACGGATGAGTTTAGGATGTTTATATTCAAAGTGAAGCCTTGTTCAAGGGCTTATTCTCATGATTGGACAGAGTGTCCCTTTGTTCATCCAGGGGAAAACGCAAGGCGCCGTGATCCGATGTCATATCAATACACATGTGTCCCTTGTCCTGAGTTTCGGAAGGGATCATGCAGTAAAGGGGATGCTTGTGAATATGCACATGGTATTTTTGAGTGCTGGCTTCATCCTGCTCAATACAGAACAAGGCTTTGTAAGGATGAGACCGAATGCACCCGAAGAGTCTGCTTTTTTGCACACAAACCCGAGGAGCTTCGCCCATTGTATGCTTCTACTGGTTCTGCTTTGCCTTCGCCTATATCCTATTCCAATTCACCTACTGCTTCTTCCGTGGATTATTTCACATTGAGCTCTCCGTCCAGTTCGACACAATCCATGTCGACACCGCCTTTGACTCCATCTGCAGCGTCATCTTCTGTAGGTGGAACCATGTGGCCGACTCAGTCTCATGCTGCAGTTCCTACACTTCAGTTGCCGAGAAGCAGATTGAAAACTGCCTTGAACGCTAGAGATGATACTGAATTTCTCGAACATGAAAATCGCCTTATGCAGAAGCTAATGATTGAAGAGATGACAGATCTTTCATTCCCTTCAAATAGGCTTGCAGGTGTGAATCCTGCCAACCTCGAAGACATTCTCGGTTCTCAGATACAATCTCCAACATCAATTCATGTGCATCCGAATGTGATTCAGCAACTTTGGGGCTTTTCTTCTAACCTCACAAATTCAAATGTGATTGGATCACCACAGATCACCGTTGATCCGTCTACAAATTCAAAAAATGATGCTCTGTCAAAGCGTAGCCAGAGCTTTATTGAGCGCAGCAGCATGGCGAGCTTTAGTTCTATGGAGCCATATACAAACTTCTCTGGTTGGAGTTCCCCTGATGGAAAATTAGACTGGTCCATCCGTGGTGATGAACTGAATAAGATGAAAAAGTCTTATTCTTTCGGCTTTCGAAATCAACTTAGCAATTCAACAATGGTTGCACAAAATGTTGATGATCAAGATGTATTATTAAGCCAGGAATCATGGGTTAGTTCACTTGTGAAGGATGCTCCAACAGTGCAATGGGATCAGTATTGTGTTGAAGTGTAA 1812 0.4266 MCNGSNRKLSQTGLIRGHEYEREEELQHEVSDLLVFSATDDVIAFKEAVEKDNHDVNEVGLWRIGSKEMGYEERTPLMIASLFGSKAVLFYILETGRVDVNQGCGSDRATALHCAVSGCSAASSEVIKLLLDASADVNSVDANGNRCIDLIVMMPNSISGSKKRLLQAILEGTDDDCDFLKEVCFQMEKQQQDIGTPRTEKKDYPIDLSLPDINNGIYSTDEFRMFIFKVKPCSRAYSHDWTECPFVHPGENARRRDPMSYQYTCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDETECTRRVCFFAHKPEELRPLYASTGSALPSPISYSNSPTASSVDYFTLSSPSSSTQSMSTPPLTPSAASSSVGGTMWPTQSHAAVPTLQLPRSRLKTALNARDDTEFLEHENRLMQKLMIEEMTDLSFPSNRLAGVNPANLEDILGSQIQSPTSIHVHPNVIQQLWGFSSNLTNSNVIGSPQITVDPSTNSKNDALSKRSQSFIERSSMASFSSMEPYTNFSGWSSPDGKLDWSIRGDELNKMKKSYSFGFRNQLSNSTMVAQNVDDQDVLLSQESWVSSLVKDAPTVQWDQYCVEV* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3616 603 SUPERFAMILY Ankyrin repeat 69 149 IPR036770 -
Psa5g3616 603 MobiDBLite consensus disorder prediction 360 379 - -
Psa5g3616 603 Pfam Ankyrin repeats (3 copies) 67 141 IPR002110 GO:0005515
Psa5g3616 603 Gene3D - 263 325 - -
Psa5g3616 603 ProSiteProfiles Zinc finger C3H1-type profile. 262 289 IPR000571 GO:0046872
Psa5g3616 603 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 267 287 IPR000571 GO:0046872
Psa5g3616 603 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 18 593 - -
Psa5g3616 603 Gene3D - 27 169 IPR036770 -
Psa5g3616 603 SMART ANK_2a 107 139 IPR002110 GO:0005515
Psa5g3616 603 SMART ANK_2a 72 102 IPR002110 GO:0005515
Psa5g3616 603 ProSiteProfiles Ankyrin repeat profile. 107 142 IPR002110 GO:0005515
Psa5g3616 603 PANTHER UNKEMPT FAMILY MEMBER 18 593 IPR045234 -
Psa5g3616 603 SMART c3hfinal6 262 288 IPR000571 GO:0046872
Psa5g3616 603 SMART c3hfinal6 297 320 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3616 Psa-Chr5 284250201 284252106 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3616 25 556 C2H2 Transcription Factor Family AT5G12850 40.879 1.09e-135 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa5g3616 Ank_2 1.5e-06 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3616 - - mtr:MTR_1g075890 798.505