Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3614 ATGTGCAACGGTTCGAATAGAAAACCCTCTCAAACTGGTTTGATTAGGGGTCATGAATATGAAAGACAAGAAGAACTGCAGCATGAGGTTTCTGATTTGCTTCTGTTTTCAGCCACAGATGATGTTATTGCTTTTAAAGAGGCTGTTGAAAAAGACAATCATGATGTCAATGAGGTAGGCTTGTGGATTGGCTCAAAGGAAATGGGATATGAAGAGAGGACACCTCTCATGATTGCTTCCTTATTTGGAAGCAAGGCTGTATTGTTTTATATTCTCGAAACCGGCCATGTCGATGTTAACCAAGCGTGTGGATCGGATAGGGCTACTGCTCTTCACTGTGCTGTTTCTGGTTGTTCTGCTTCTTCTTCTGAGGTTATCAAGTTTTTGCTTGATGCATCTGCACATGTTAATTCTGTTGATGCGAATGGTAACCGGTGCATTGACTTGATTGTCATGATGCCTAATAGTATCTCCTGTTCAAAGAAGAGGTTACTACAAGCCATACTAGAAGGTACTGATGATGACTGTGATTTCCTTAAGGAAGTATGTTCCCAAATGGAGAAGCAGCAACAAGATATAGGTACACCTCGAATTGAGAAGAAAGATTATCCCATTGATCTATCCCTACCCGACATAAATAATGGAATATATAGTACGGATGAGTTTAGGATGTTTATATTTAAAGTGAAGCCTTGTTCAAGGGCTTATTCTCATGATTGGACGGAGTGTCCCTTTGTTCATCCAGGGGAAAATGCAAGGCGCCGTGATCCGATGACATATCAATACACATGTGTCCCTTGTCCTGAGTTTCGGAAGGGATCATGCAGTAAAGGGGATGCTTGTGAATATGCACATGGTATTTTTGAAACAAGGCTTTGTAAGGATGAGACCGAATGCACCCGAAGAGTCTGCTTTTTTGCACACAAACCCGAGGAGCTTCGCCCATTGTATGCTTCTACTGGTTCTGCTTTGCCTTCACCTATATCCTATTCCAATTCACCCACTGCTTCTTCCATGGATTATTTCACATTGAGCTCTCCGTCCAGTTCGACACAATCCATGTCGACACCGCCTTTGACTCCATCTGCAGCGTCATCTCCTGCAGGTGGAACCATGTGGCCGACTCAGTCTCATGCTGCAGTTCCTACACTTCAGTTGCCGAGAAGCAGATTGAAAACTGCATTGAATGCTAGAGATGATACTGAATTTCTCGAACTTGAAAATCGCCTTATGCAGAAGCTAATGGTTGAAGAGATGACAGGTCTTTCATTCCCTTCAAATAAGCTTGCAGGACTGAATCCTTCTAACCTCGAAGACATTCTCGGTTCTCAGATACAATCTCCAACATCAACTCATGTGCATCCGAATGTGACTCAGCAACTTTGGGGATTTTCTTCTGACCTTACCAATTCAAAAGTGATTGGATCACCACAGATCACTGTTTATCCGTCTATGAATTCAAAAAATGATGCCCTGTTGAAACGAAGCCAGAGCTTTATCGAGCGCAGCAGCATGGCGAGCTTTAGTTCTGAGCTTCCTTCTGCTAACTCAGTTGCTATGGAGCCATATACTAACATCTCTGGTTGGGGTTCCCCTGATGGAAAACTAGACTGGTCCATCCCTTATACTAACATCTCTGGTTGGGGTTCCCCTGATGGAAAACTAGACTGGTCCATCCGTGAGGATGAACTGAATAAGATGAGAAAGTCTTATTCTTTTGGCTTTCGAAACCAACTCAGCAATTCAAGAATGGTTGGACAAAATGCTGATGAGGAAGATCAATTAATAAGCCAGGAGTCCTGGGTTAATTCACTAGTGAAGGATGCACCAACAGTGCAATGGGATCAATATTGA 1854 0.4293 MCNGSNRKPSQTGLIRGHEYERQEELQHEVSDLLLFSATDDVIAFKEAVEKDNHDVNEVGLWIGSKEMGYEERTPLMIASLFGSKAVLFYILETGHVDVNQACGSDRATALHCAVSGCSASSSEVIKFLLDASAHVNSVDANGNRCIDLIVMMPNSISCSKKRLLQAILEGTDDDCDFLKEVCSQMEKQQQDIGTPRIEKKDYPIDLSLPDINNGIYSTDEFRMFIFKVKPCSRAYSHDWTECPFVHPGENARRRDPMTYQYTCVPCPEFRKGSCSKGDACEYAHGIFETRLCKDETECTRRVCFFAHKPEELRPLYASTGSALPSPISYSNSPTASSMDYFTLSSPSSSTQSMSTPPLTPSAASSPAGGTMWPTQSHAAVPTLQLPRSRLKTALNARDDTEFLELENRLMQKLMVEEMTGLSFPSNKLAGLNPSNLEDILGSQIQSPTSTHVHPNVTQQLWGFSSDLTNSKVIGSPQITVYPSMNSKNDALLKRSQSFIERSSMASFSSELPSANSVAMEPYTNISGWGSPDGKLDWSIPYTNISGWGSPDGKLDWSIREDELNKMRKSYSFGFRNQLSNSRMVGQNADEEDQLISQESWVNSLVKDAPTVQWDQY* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3614 617 SMART ANK_2a 71 101 IPR002110 GO:0005515
Psa5g3614 617 SMART ANK_2a 106 138 IPR002110 GO:0005515
Psa5g3614 617 SMART c3hfinal6 261 287 IPR000571 GO:0046872
Psa5g3614 617 Gene3D - 258 319 - -
Psa5g3614 617 MobiDBLite consensus disorder prediction 348 372 - -
Psa5g3614 617 ProSiteProfiles Zinc finger C3H1-type profile. 261 288 IPR000571 GO:0046872
Psa5g3614 617 PANTHER UNKEMPT FAMILY MEMBER 18 541 IPR045234 -
Psa5g3614 617 PANTHER UNKEMPT FAMILY MEMBER 543 611 IPR045234 -
Psa5g3614 617 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 266 286 IPR000571 GO:0046872
Psa5g3614 617 ProSiteProfiles Ankyrin repeat profile. 106 141 IPR002110 GO:0005515
Psa5g3614 617 SUPERFAMILY Ankyrin repeat 45 154 IPR036770 -
Psa5g3614 617 Gene3D - 27 170 IPR036770 -
Psa5g3614 617 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 18 541 - -
Psa5g3614 617 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 543 611 - -
Psa5g3614 617 Pfam Ankyrin repeats (3 copies) 64 140 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3614 Psa-Chr5 284236672 284238690 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3614 25 609 C2H2 Transcription Factor Family AT5G12850 38.769 1.38e-122 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa5g3614 Ank_2 1.4e-06 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3614 - - mtr:MTR_1g075890 770