Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3567 ATGGGATCAGGTTCTTCACCTTGTGCTTGTTGCAAATTGTTGAGAAGGCGTTGCACACAAGAATGCATCTTTGCGCCTTATTTTCCTTCTGATGACCTACGCAAGTTTGCCATTGTTCATAAGGTTTTCGGTGCTAGCAATGTCACCAAAATGCTCCAGGAGCTTCCTATTGATCAAAGAGCAGAAACAGTGAATAGTTTAGTTTATGAAGCAAATGCAAGAGTGAGAGATCCTGTTTATGGATGTGTTGGAGCCATATCATATCTTCAATCACAAGTTTCACAATTACAAATGCAACTTGCAATGGCTCAAGCAGAGATTCTTTGCATTCAGATGCAGCAAGACTCAGCTACGGTTACCGACACATTACCAGCATATAATGACCAAGATGAGAGATTGATGCTCCTATCTGAAAACAGTAACTGCTATGGAGATCTTCCACAGTATATTAACTTTCCTTCTTCTTCTTCTTCCTCATCTTCCAATGTATTCCAAGACTTTGAGCCTCTCAAAAGAGAGTCTTTTTGGGCTTAA 534 0.4026 MGSGSSPCACCKLLRRRCTQECIFAPYFPSDDLRKFAIVHKVFGASNVTKMLQELPIDQRAETVNSLVYEANARVRDPVYGCVGAISYLQSQVSQLQMQLAMAQAEILCIQMQQDSATVTDTLPAYNDQDERLMLLSENSNCYGDLPQYINFPSSSSSSSSNVFQDFEPLKRESFWA* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3567 177 Coils Coil 177 177 - -
Psa5g3567 177 Coils Coil 86 106 - -
Psa5g3567 177 PANTHER LATERAL ORGAN BOUNDARIES (LOB) DOMAIN PROTEIN 1 174 - -
Psa5g3567 177 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Psa5g3567 177 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 174 - -
Psa5g3567 177 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3567 Psa-Chr5 278748137 278748911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3567 2 176 AS2 family AT2G30130 61.053 3.02e-71 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Psa5g3567 LOB 6.9e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3567 - - gmx:100819419 234.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3567 5 278748137 278748911 Psa5g3567 5 278748137 278748911 ECH