Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3563 ATGTCTCCTTCACCATCACAAATCTTCATCATACTCCTCACCGTCCTCTTCCATTTCCACCACTCCTCTTCATTCTCCCTCTCAGTAGAAAACCCTGAACAAAACTTCATACTCTCACCCAACCACACTTTCACCGCAGGCTTCTATCCCGTAGGTGAAAATGCTTATTCCTTCGCCATTTGGTTCACGCAAAAACACAAACACCTTGACGACAACAACAACAACAACGCCACCATCGTTTGGATGGCAAATCGTGACCAACCAGTAAACGGAAAACGCTCAACACTTTCTCTTCTCAAAACCGGCAACCTCGTCCTAACCGACGCAGGTCAATCCGTCGTTTGGTCCACAGACACCGACTCATCAAAACCGCTTCAGTTAGTCTTACACGAAACCGGTAACCTCGTTCTTCAAGAACTAAACACAAACGGTTCCATCAATAGTACTATCTGGCAAAGCTTCGATTTCCCAACGGATACACTTCTACCAGGCCAAACCCTCACCAGATTCACGAAACTTGTTTCATCTAGAAGCGAAACTAATTTCTCATCTGGTTTCTATAAACTCTTCTTCGACAACGACAACATTCTCCGTATTCTTTACGAAGGTCCAAGAGTTTCTAGTGTTTTTTGGCCAGATCCTTGGCTTACTAGCAACGGTGCTGCTGGTAGTGGTAGCAGATCAACTTACAACAGTAGCAGAATCGCTTCTTTGGATTCATTTGGTAGGTTTAGCTCTTCTGATAATTTCGTTTTCAATACTTCTGACTATGGAGCATTGCTGCAACGGAGACTTACACTTGACCATGATGGTAACGTTCGCATTTATAGCAGAAAAGATGAGAAGCAAAGTTGGTTTGTTTCCGGTCAATTTAAACAACAACCTTGTTTCGTTCATGGGATTTGTGGACCAAATAGTACTTGTAGTAATGATCCAATGAATGGTAGAAAGTGTTCTTGTTTACCCGGTTATGTTTGGATTGATGATCAAGATTATTATCAAGGTTGCAGACCCAATTTTCAACTTTCATGCAGTAACAAGACTCATGAGTCAAGGTTTTTGGCTTTACCTCATGTTGATTTTTATGGATATGATTATGCTTTCTATGTGAATAAAACTTACAAAGAATGCGAGGATCTGTGTTCACACTTGTGTGGTTGTGCTGGATTTCAGTATACTTTTACAGCTGAATACGGTGGTTATTATTTTTGTTATCCAAAGATTCAGTTGCTTAATGGCCATCGTTCACAGAGTTTTCTAGGATCGTTTTACCTGAAATTGCCGAAAAGTAGTGATTTTGTTGATGACATGAAGATTCAACAAAATGGGATGGGAAGGGTTTGTTCAACGAATGGAGTAGTAAAGCTTGAGCGAGAATACATAAAAGAGAAAGAAAATGGTTCCTTGAAGTTCATGCTTTGGTTTGCTGGTGGTTTAGGCGGAGTTGAGCTCTTGGGATTTTTTCTTGTGTGGTTTTTCTTGTTTAGGAGCAGCAAAAACTCCGATGAAGAAAATAATGGGTATATTCTAGCAGCAGCTGGATTTAGGAAATTTAGTTACTCTGAATTGAAACAAGCTACAAAAGGTTTTAGTCAAGAGATTGGAAGAGGTGCTGGTGGAAGCGTCTATAGGGCTGTTTTATCTGATAATCGCGTGGCTGCAATAAAGCGTTTGCATGAAGCAAATCAAGGAGAGAGTGAGAGTGAGTTTTTTGCTGAAGTTAGCATCATTGGAAGGCTTAACCACATGAATTTGATTGGAATGTGGGGTTATTGTGCAGAGGGAAAGCATAGGTTATTGGTTTATGAGTACATGGAAAAGGGTACTTTAGCTGATAATCTCTCATCAAATGAACTTGATTGGGGTAAAAGGTATAACATTGCTATGGGAACTGCAAAGGGTCTTGCTTATTTACATGAAGAGTGTTTGGAGTGGATTTTGCATTGTGATATAAAGCCACAGAACATACTTATTGACTCTGATTACCAACCTAAGGTAGCCGATTTTGGTTTGTCTAAGCTATTGAATAGGGATGACCTTGATAATTCAAATTTCTCAAGGATAAGAGGGACAAGAGGTTACATGGCACCGGAATGGGTTTTCAACTTGCAAATCACTTCTAAGGTTGATGTTTATAGCTATGGAGTTGTGGTGTTGGAGATGATTACTGGAAAGAGTCCAACAACTGGTATACAGATCAAGGAAGAGTTGTGTCATGAGAGGTTGGTAACATGGGTCAGGGAGAAAAGGAGAAAAGGATTAGAAGTTGGTTGTTGGGTAGAACAAATTGTTGATCCTAAATTGGGATCAAACTATGATGTTATGAAAATGGAGACTTTGGCAAATGTTGCTCTGGATTGTGTAGCAGATGATAAAGATGTTAGACCCACCATGAGTCAAGTTGTTGAGAGACTTCTAAGTCATGATAATAATTATTGA 2439 0.3998 MSPSPSQIFIILLTVLFHFHHSSSFSLSVENPEQNFILSPNHTFTAGFYPVGENAYSFAIWFTQKHKHLDDNNNNNATIVWMANRDQPVNGKRSTLSLLKTGNLVLTDAGQSVVWSTDTDSSKPLQLVLHETGNLVLQELNTNGSINSTIWQSFDFPTDTLLPGQTLTRFTKLVSSRSETNFSSGFYKLFFDNDNILRILYEGPRVSSVFWPDPWLTSNGAAGSGSRSTYNSSRIASLDSFGRFSSSDNFVFNTSDYGALLQRRLTLDHDGNVRIYSRKDEKQSWFVSGQFKQQPCFVHGICGPNSTCSNDPMNGRKCSCLPGYVWIDDQDYYQGCRPNFQLSCSNKTHESRFLALPHVDFYGYDYAFYVNKTYKECEDLCSHLCGCAGFQYTFTAEYGGYYFCYPKIQLLNGHRSQSFLGSFYLKLPKSSDFVDDMKIQQNGMGRVCSTNGVVKLEREYIKEKENGSLKFMLWFAGGLGGVELLGFFLVWFFLFRSSKNSDEENNGYILAAAGFRKFSYSELKQATKGFSQEIGRGAGGSVYRAVLSDNRVAAIKRLHEANQGESESEFFAEVSIIGRLNHMNLIGMWGYCAEGKHRLLVYEYMEKGTLADNLSSNELDWGKRYNIAMGTAKGLAYLHEECLEWILHCDIKPQNILIDSDYQPKVADFGLSKLLNRDDLDNSNFSRIRGTRGYMAPEWVFNLQITSKVDVYSYGVVVLEMITGKSPTTGIQIKEELCHERLVTWVREKRRKGLEVGCWVEQIVDPKLGSNYDVMKMETLANVALDCVADDKDVRPTMSQVVERLLSHDNNY* 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3563 812 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 6 811 - -
Psa5g3563 812 SMART blect_4 28 157 IPR001480 -
Psa5g3563 812 ProSitePatterns Serine/Threonine protein kinases active-site signature. 646 658 IPR008271 GO:0004672|GO:0006468
Psa5g3563 812 Gene3D - 26 156 IPR036426 -
Psa5g3563 812 Gene3D Transferase(Phosphotransferase) domain 1 605 812 - -
Psa5g3563 812 CDD PAN_AP_plant 340 428 - -
Psa5g3563 812 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 211 IPR036426 -
Psa5g3563 812 ProSitePatterns Protein kinases ATP-binding region signature. 534 556 IPR017441 GO:0005524
Psa5g3563 812 SUPERFAMILY Protein kinase-like (PK-like) 509 805 IPR011009 -
Psa5g3563 812 ProSiteProfiles Bulb-type lectin domain profile. 29 150 IPR001480 -
Psa5g3563 812 Pfam D-mannose binding lectin 78 169 IPR001480 -
Psa5g3563 812 Gene3D - 157 286 IPR036426 -
Psa5g3563 812 PIRSF SRK 2 811 IPR024171 GO:0004674
Psa5g3563 812 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 6 811 - -
Psa5g3563 812 CDD STKc_IRAK 534 805 - -
Psa5g3563 812 Gene3D Phosphorylase Kinase; domain 1 495 604 - -
Psa5g3563 812 CDD B_lectin 35 157 IPR001480 -
Psa5g3563 812 SMART serkin_6 528 806 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g3563 812 Pfam S-locus glycoprotein domain 258 325 IPR000858 GO:0048544
Psa5g3563 812 Pfam Protein kinase domain 531 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g3563 812 ProSiteProfiles Protein kinase domain profile. 528 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3563 Psa-Chr5 278657682 278661661 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3563 518 805 Trihelix Transcription Factor Family AT5G38560 42.662 2.63e-66 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Psa5g3563 Pkinase 3.3e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3563 - - gmx:100806357 1083.17