Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3553 ATGGGGATCATCACTATCACTGATACAGGCATTGGTATGACTAAGCAAGAACTAGTTGACTGTCTTGGAACTATTGCTCAAAGTGGAACTTCAAGTTTTCATTTGAGAAGTGTACGTATTACTTTGAGATTGCTGTGGCATTGGCTGTGGCTGCTATTCCGGAGGGATTGCCCGCTGTCATCACGACTTGCCTTGCACTTGAGAATTTTGCCAGCTGGTCGATTGGATGCTAATCTTCAGATGATAGCGAAAATTGCTGCTGTTTGTAATGATGCCGGAGTGTCACAGTCAGAGCATAAGTTTGTTGCCCATGGAATGCCTACTGAAGCAGCTTTGAAGGTTTTGGTAGAGAAGATGGGCCTTCCTGAAGGATCCAAGGATGTACAATCAGGAAGCAAAAATACCATCCTGCATTAA 417 0.4412 MGIITITDTGIGMTKQELVDCLGTIAQSGTSSFHLRSVRITLRLLWHWLWLLFRRDCPLSSRLALHLRILPAGRLDANLQMIAKIAAVCNDAGVSQSEHKFVAHGMPTEAALKVLVEKMGLPEGSKDVQSGSKNTILH* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3553 138 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 3 33 IPR036890 -
Psa5g3553 138 PANTHER RETICULUM [ER]-TYPE CALCIUM ATPASE, PUTATIVE-RELATED 68 126 - -
Psa5g3553 138 PANTHER CALCIUM-TRANSPORTING ATPASE 68 126 - -
Psa5g3553 138 Gene3D - 61 137 IPR023299 GO:0000166
Psa5g3553 138 Gene3D - 1 41 IPR036890 -
Psa5g3553 138 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 75 123 IPR023299 GO:0000166
Psa5g3553 138 PRINTS 90kDa heat shock protein signature 3 20 IPR020575 -
Psa5g3553 138 PRINTS 90kDa heat shock protein signature 21 38 IPR020575 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3553 Psa-Chr5 277900023 277900656 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3553 71 130 Primary Pumps ATPases(2) AT1G07810 73.333 4.97e-25 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3553 K01537 - gmx:100788807 113.235