Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3548 ATGGCATTCGGAGAATGTTATGGATTGTGGAAAGCTGAAGAGTCATGTTATTCAAACTCGTGGAATTGGGAACCTGTGATATTGTCTGAAACTGAATACTGCCCAGAAGCTGTTCGACAATATGTTCTTGCTTCTCACAAAAGCGAGACTTTGAAGGAAAAAGTACGGAAGCATCTTGGATATCTTGGATGGCAAATTCACAAATATCGTAATCATCTCAGGTACAAGCCACCCCATGGAATCTTGTGTCGCAAGAAATTTTACTACTCACTTATTGAGATCTGTAAAGCTATGCAAATGGAATCCAGTGTGAACTCTTCTTCTGTTGCTGTTGCTGTTGCAATGCCATATTGTCCTCAAGCCATTGTTGAATACCACAAACATGCACTCGACCCGACTTTGCATGATAAAAGAAAACTTATTTCAAATATAAGAAACTATCTCGTCAAAGAAGGATGGGTTTTAACTGATCCGCCCCTTGAAAATAGAAGAAGGGGTGTGTTATATACTTCCCCGCAAAAGCGGAAATTTTTCTCACTGAGCACTGTATGCAAATTCCTAATTGAGGAAAGTACTAAAAGATCGTCTATTTCTGGCATTCAACCTCTAAATGCCTCCTCGGTTGTTAACAAAGAAAGTGTTGATTGGGTACCAAGTGATGATGACTTATCAAGTAAAGCATCACATTTGCTTTCTGATGAGACCGAGTTATACACTATAGACAGGGTTGCTACAAATAGGTCAAAGCGAAAACGCCATGAATCAAGATCTCTAGCTGTGGTGCCTTCTTCTGTTGCAGTGGCAGGTGAACAAGCTACTCCTTCTGCGGCATATTGTCAACCCATTTTTGAATACCACAAACATGCACTCGAACCGAATTGGCATGGTAAAAGAAAACTTATTTCAAAAATAAGAAAGCATCTCGTCGAAGAAGGATGGGTTTTAACTGACCCGCCCCTCGAAAACAGAAGAAGGGGTGTGTTATATACTTCTCCGCAAAAACGGAGGTTTACCTCACTGAACATGGTATGCAAATTCTTAATTGAGGAAAGTAATGGAAGATCATCTATTTCCGGCATTGAACCTTTAATGCGAAAACGCGATGAATCAAGTCTAAGGATGAGATCAAATAAAAGAGTGCGAAAATTTTCGGTCCCTTCTCTATCACATCAGAAAGCTCTGAATGTTGTTTCTTGGTTGATAGACAGCAACGTGGTGTTACCAAGGTCTAAGGTTTGTTACGTAGCAAAAAGACAGCGTGTCATGGCTTCTGGTCGATTAACTCAGGATGGAATCAAGTGTAAATGTTGTCATAAAATATACAGTCTTGTTTCCTTCGAATTTCATGCCATTGGCAGTAATACCACCAGACCAAGTGCTAGTATCTTTCTGGATGATGGTAGGTCGCTCTTACAGTGCCAGATACAAATAATGCAAGATCATGTGTCAAGGGTAGCTATGGTAAAATCACAGACTCATATGTGTCAGAGTGAAAACGACTACATTTGTTCCGTTTGCCGCGACGGGGGCGAACTTCTTTTGTGTGATCGGTGTCCGTCTTCATTTCATAAGACGTGTCTTGGTCTTGAGGATGTCCCTGATGGTGACTGGTTTTGTCCATCATGTCTTTGTGGGATTTGCGGCCAAAGAAAATTCAATGGGGGCGGTGAGGATGGACATTTCCTTAAATGCATTCAGTGTGAACATAATTATCATGTTGCATGCCTGATAAGTAGAGGTACATGTAAGTCCAGAAGTTATGCGGAAAGCCGGTTTTGCGGAAAAGACTGTGAAAGGTTATATGAAGGTCTTCAAAGAATGTTGGGAGAGCCAGTTTCAGTGGGTGTGGACAATCTAACATGGACACTGGTGAAGTCTATCGACTCTGAGAGTTGTGATATTGATAGAACCCTCCTCTGGCAGAGATCTGGTGGAAATAAAAGTGGATTATTGGCAGAAAGTTACAGCAAACTCAATGTTGCTCTTTCTGTGATGCATGAATGTTTTGAGCCCCTAAAGGAACCCTCCTCTGGCAGAGATCTGGTGGAAGATGTTATATTCAGCAGATGGTCAGAACTTAATCGAATGAATTTCCGGGGTTTCTATACTGTACTTCTAGAGAAAGATGAAGATCTGGTCAGTGTGGCAACTTTTAGGGTCTTTGGAGATAAGGTGGCTGAAGTACCTCTCGTTGGTACCAGATTTCAATATCGTCGACATGGAATGTGTCGCATCTTAATGGATGAACTGGAAAAGGATAGGACTGTTCAGAAGAAACAACTGAGCCAAACTCAACTGCCGGACCCAACCAAAATAAACCATATAGAACCTATGAAGCACAGCGGGCAACGTGACATGCATCGGTGTCCGACACTTGTATGA 2382 0.4165 MAFGECYGLWKAEESCYSNSWNWEPVILSETEYCPEAVRQYVLASHKSETLKEKVRKHLGYLGWQIHKYRNHLRYKPPHGILCRKKFYYSLIEICKAMQMESSVNSSSVAVAVAMPYCPQAIVEYHKHALDPTLHDKRKLISNIRNYLVKEGWVLTDPPLENRRRGVLYTSPQKRKFFSLSTVCKFLIEESTKRSSISGIQPLNASSVVNKESVDWVPSDDDLSSKASHLLSDETELYTIDRVATNRSKRKRHESRSLAVVPSSVAVAGEQATPSAAYCQPIFEYHKHALEPNWHGKRKLISKIRKHLVEEGWVLTDPPLENRRRGVLYTSPQKRRFTSLNMVCKFLIEESNGRSSISGIEPLMRKRDESSLRMRSNKRVRKFSVPSLSHQKALNVVSWLIDSNVVLPRSKVCYVAKRQRVMASGRLTQDGIKCKCCHKIYSLVSFEFHAIGSNTTRPSASIFLDDGRSLLQCQIQIMQDHVSRVAMVKSQTHMCQSENDYICSVCRDGGELLLCDRCPSSFHKTCLGLEDVPDGDWFCPSCLCGICGQRKFNGGGEDGHFLKCIQCEHNYHVACLISRGTCKSRSYAESRFCGKDCERLYEGLQRMLGEPVSVGVDNLTWTLVKSIDSESCDIDRTLLWQRSGGNKSGLLAESYSKLNVALSVMHECFEPLKEPSSGRDLVEDVIFSRWSELNRMNFRGFYTVLLEKDEDLVSVATFRVFGDKVAEVPLVGTRFQYRRHGMCRILMDELEKDRTVQKKQLSQTQLPDPTKINHIEPMKHSGQRDMHRCPTLV* 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3548 793 Pfam PHD-finger 502 544 IPR019787 -
Psa5g3548 793 SMART PHD_3 544 598 IPR001965 -
Psa5g3548 793 SMART PHD_3 502 543 IPR001965 -
Psa5g3548 793 CDD PHD2_CHD_II 503 542 - -
Psa5g3548 793 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 107 260 - -
Psa5g3548 793 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 367 753 - -
Psa5g3548 793 SMART ring_2 544 596 IPR001841 -
Psa5g3548 793 SMART ring_2 503 542 IPR001841 -
Psa5g3548 793 SUPERFAMILY FYVE/PHD zinc finger 482 543 IPR011011 -
Psa5g3548 793 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 689 753 IPR016181 -
Psa5g3548 793 Pfam Tify domain binding domain 425 476 IPR032308 -
Psa5g3548 793 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 487 554 IPR013083 -
Psa5g3548 793 ProSiteProfiles Zinc finger PHD-type profile. 500 545 IPR019787 -
Psa5g3548 793 PANTHER PHD ZINC FINGER PROTEIN 367 753 - -
Psa5g3548 793 PANTHER PHD ZINC FINGER PROTEIN 107 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3548 Psa-Chr5 277792049 277795640 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3548 374 752 PHD Transcription Factor Family AT5G58610 48.052 2.70e-115 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Psa5g3548 TDBD 7.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3548 - - cam:101498411 687.182