Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3546 ATGGAGGGTTTAGAGGAATCCAGAAGAAGCTTTAAGCGGAAGTGTGAGTTCCAGCAACAAAAGCTTCGAATCAATGAAAGAGTTGAGGTGAAGAGTTTTGAGGAGGGTTTTCTGGGATCATGGCATCCGGGCACTGTTATTGAATGTGGGAAGCTGACGCGTCATGTTAGATATGAGAATATTGTGGAGGATGATGGGTTGGATTATTTGGTGGAAGTGGTGAAAGTTTCGGATGCTTTGGATTGTGAGTTTGGTTCTCCGAGTAAATGTGCGGTGATTAGGCCACTTCCTCCTTGGGTTGAGTTTCAAACCTGTGATATTAAATTTGGTCTTTGTGTTGATGTGAGTTACCAGGATGCTTGGTGGGAAGGTGTTGTGTTTGATCACCATGAAGTAATGGAGAAGAGGAGTGTGTTCTTTCCTGATTTGGGTGATGAGATGAAGGTCGAGATCGATCAAATGCGGATTACTCAGGATTGGGATGAAGTTACGGGGAAATGGCAGCGACGGGGGAACTGGGTGTTTCTTGAATTGATCGAGGAGTGTCTGCGGGAGTCATATCTTGCAGTTTCGGTGAAGCAAATTTGGTATGAAGTGCAACAAAAAAAGGAATTTGCAGCTGTTGGCGATTGGACTTTAAATGTGAAGAAGGATTTGTGGAGAGACATGATAATGCAGGTAGTTGTTGACTACATGGGTATTACAGTAAGAGAAGTTTTCTCAACCTTGAAACCTCAAGAGCTGGACTCGGTTGGCCTAATGTCTAAAGTTGATTCAAACAAGACGTTGTCTGAGAAGGAAAATTTTGAGCAGAAACAACTTGTTATTTTTCCAGTTGAAAAGGACTTTCCAAAGTTTCAAAGTGAAGTTTCAGTTGCTATTTGTTCTGAGAGAAACAAACGTAGATCTTCAACTCATTCAAATTCCAACAATTGGGAACCTGTAATAGTGCCTGAAATGGAATACTGCCCCGATGCTGTTACGCAATACATACTTGCTTCTCAGAACAGGAATAAGAGACCGATTTGGAGGGAAAAAGTATGGAAGCATCTTGCATATCTTGGATGGGAAATTGACCAACATGGTCATCATATCAGGTACAAGCCACCAGATGGAATCTGTCAGAAGAAATTTTACTACTCACTTATTGAAATTTGTAAAGTTATGGAATCAAGGGTGAACTCTTCGGCATCAAAAAATGATATCGGTAACAATGCTCCTACTCCTTCCTCTATTAATGGTTATAATTTATCTATTTCTTCTTCTACTCCACAATCTGAACCACCTCAAACCATTAATATAAGTGCATATCTTCCTACTCAACCTACACCATCTAAACCACCAAAACTACCTAGACCATGTCATGTTCCACATGTGCTTCTTAATCCATTGGAAAAGAGTCAGAATCCAGATGTATCTTCTCTAGCTGTGGTGCCTTCTTCTGTTGCAGTGGCAGGTGAACAAGCTACTCCTTCAGCGGCGTATTGGCCTCAAGTCATTGCTGAATACCACAAACGTGCACTCGAACGGAATTGGCGTGGTAAAAAAAAATATATTTCAAAAATAAAAAAGCATCTCCTGAAAGAAGGATGGGTTTTAACTGACCCTCCCCCGGAAAACAAAAGAAGGGGTGTGTTATATACTTCCCCGCAAAACCGGAACTTTACCTCACTGAACATGGTATGCAAATTCCTAATTAAGGAAAGTAATATAAGATCATCTATTTCTGGAATTGAACCTTTAAATGCCTCAGTTGTTAACGAAGAAAGTGTTGATCAGGAAAGTATTCAAAGATCAACTATGTCTGGCATTCAACCGTTTGTTAGTGATGAAAGTGTTGATCGAGTACCAAGTGATGATTTATCAAGTAAAACATCACATTTTCTTCCTCATGAGACTGAATTGTACACTATAGACAGGGTTGCTACAAATAGATCAAAGAGAAAACGCGATGATTCAAGTCTAAGGGTGAGATCGAATAAAAGAGTGCGAAAATTTTCTGCCCCTTCTCTATCACATCAGAAAGCTCTGAATGTTGTGTCTTGGTTGATAGACAGCAATGTGGTGTTACCAAGGTCTAATGTTTATTATGTAGCAAAAAGACAGCATGTCATGGCTTCTGGTCGAATAACTCACGATGGAATCAAGTGTAAATGTTGTCATAAAATATTTAGTCTTGTTTCCTTTGAATTTCATGCTATTGGCAGTAATACCACCAGACCAAGTGCTAGTATCTTTCTGGATGATGGTAGGTCGCTCTTACAGTGCCAGATACAAATAATGCAAGATCATGTGTCAAGGGAGGCTATGGTAAAATCACAAACTCATTTGTGTCAGAGTGAAAACGACTACATTTGTTCCGTTTGCCGCAACGGGGGCGAACTTCTTTTGTGTGATCGGTGTCCGTCTTCATATCATAAGACGTGTCTTGGTCTTGAGGACATCCCTGATGGTGAATGGTTTTGTCCATCATGTCTTTGCGGGATTTGTGGCCAAAGAAAATTCAATGGGGGCGGTGAGGATGGACATTTCCTTAAATGCATTCAGTGTGAACATAATTATCATGTTGCATGCCTGATAAGTAGAGATACATTTAAATCCAAAAGTTATGCGGAAAGCCAGTTCTGCGGAAAAGACTGTGAAAAGTTATATGAAGGCCTTCAAAGAATGTTGGGAGAGCCAGTTTCAGTGGGCGTGCGTGATCTAACATGGACATTGGTGAAGTGTATCGACTTTGAGAGTTATGATATTGATAGAACCCTCCTCTGGCAGAGATCTGGTGGAAATAAAAGTGGATTATTGGCAGAAAGTTACAGCAAACTCAATGTTGCTCTTTCTGTGATGCATGAATGTTTTGAGCCCCTAAAGGAACCCTCCTCTGGCAGAGATCTGGTGGAAGATGTTATATTCAGCCGAAGGTCAGAACTTAATCGAATGAATTTCCGGGGTTTCTATACTGTACTTCTAGAGAAAGATGGAGAGCTGGTCAGTGTGGCAACTATTAGGGTCTTAGGAGATAAGGTAGCTGAAGTACCTCTTGTTGGTACAAGATTTCAATATCGTCGACATGGAATGTGCCGCATCTTAATGGATGAACTGGAAAAGAAACTCATGCAGTTAGGAGTGAAGCAGCTTGTTTTGCCTGCTGTTCCTTGTGTGGTAGATACATGGACTGGTCCTTTTGGCTTTTCAAAGATGACAGAACATGAGAGGTCAAAATTTCTGGACTATACTTTCTTAGATTTTCAGGGTACCATCATGTGCCAGAAGTTGTTGACAAAGATGCTGTCTCCAGATTCTGTTTTGCCAATAGAGTTCCAACAAAAAGTCAGTGCTATCTCCGAAAGCAGTAGTGCTAATAAGTCTCCAGTATCTGAAGTTTACCAAGCAGGAGAGATAGTTATGAAAGAAACGGCGGATACACCAATGTTGGATGCTTTTGAAGGCGAAAGCGATAATAATAATGTAGTATCTATCGAACCTGTTATTGACTGTGTCACCATGGCGGATCAACCAGTTCTTGAGGATGAACAACATTGCCAGAACGGAACCTCCACTGTACAAGGCTCTTCTGAAAAATGGAAGAATGTCTTGCATTATTATAGACGGAGGAAAGTGAAAGGGTAG 3627 0.4083 MEGLEESRRSFKRKCEFQQQKLRINERVEVKSFEEGFLGSWHPGTVIECGKLTRHVRYENIVEDDGLDYLVEVVKVSDALDCEFGSPSKCAVIRPLPPWVEFQTCDIKFGLCVDVSYQDAWWEGVVFDHHEVMEKRSVFFPDLGDEMKVEIDQMRITQDWDEVTGKWQRRGNWVFLELIEECLRESYLAVSVKQIWYEVQQKKEFAAVGDWTLNVKKDLWRDMIMQVVVDYMGITVREVFSTLKPQELDSVGLMSKVDSNKTLSEKENFEQKQLVIFPVEKDFPKFQSEVSVAICSERNKRRSSTHSNSNNWEPVIVPEMEYCPDAVTQYILASQNRNKRPIWREKVWKHLAYLGWEIDQHGHHIRYKPPDGICQKKFYYSLIEICKVMESRVNSSASKNDIGNNAPTPSSINGYNLSISSSTPQSEPPQTINISAYLPTQPTPSKPPKLPRPCHVPHVLLNPLEKSQNPDVSSLAVVPSSVAVAGEQATPSAAYWPQVIAEYHKRALERNWRGKKKYISKIKKHLLKEGWVLTDPPPENKRRGVLYTSPQNRNFTSLNMVCKFLIKESNIRSSISGIEPLNASVVNEESVDQESIQRSTMSGIQPFVSDESVDRVPSDDLSSKTSHFLPHETELYTIDRVATNRSKRKRDDSSLRVRSNKRVRKFSAPSLSHQKALNVVSWLIDSNVVLPRSNVYYVAKRQHVMASGRITHDGIKCKCCHKIFSLVSFEFHAIGSNTTRPSASIFLDDGRSLLQCQIQIMQDHVSREAMVKSQTHLCQSENDYICSVCRNGGELLLCDRCPSSYHKTCLGLEDIPDGEWFCPSCLCGICGQRKFNGGGEDGHFLKCIQCEHNYHVACLISRDTFKSKSYAESQFCGKDCEKLYEGLQRMLGEPVSVGVRDLTWTLVKCIDFESYDIDRTLLWQRSGGNKSGLLAESYSKLNVALSVMHECFEPLKEPSSGRDLVEDVIFSRRSELNRMNFRGFYTVLLEKDGELVSVATIRVLGDKVAEVPLVGTRFQYRRHGMCRILMDELEKKLMQLGVKQLVLPAVPCVVDTWTGPFGFSKMTEHERSKFLDYTFLDFQGTIMCQKLLTKMLSPDSVLPIEFQQKVSAISESSSANKSPVSEVYQAGEIVMKETADTPMLDAFEGESDNNNVVSIEPVIDCVTMADQPVLEDEQHCQNGTSTVQGSSEKWKNVLHYYRRRKVKG* 1209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3546 1208 CDD NAT_SF 987 1047 - -
Psa5g3546 1208 CDD PHD2_CHD_II 786 825 - -
Psa5g3546 1208 SUPERFAMILY FYVE/PHD zinc finger 766 826 IPR011011 -
Psa5g3546 1208 Coils Coil 1 21 - -
Psa5g3546 1208 Pfam Agenet domain 26 98 IPR008395 -
Psa5g3546 1208 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 977 1071 IPR016181 -
Psa5g3546 1208 SMART ring_2 786 825 IPR001841 -
Psa5g3546 1208 SMART ring_2 827 876 IPR001841 -
Psa5g3546 1208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 771 837 IPR013083 -
Psa5g3546 1208 PANTHER PHD ZINC FINGER PROTEIN 10 435 - -
Psa5g3546 1208 PANTHER PHD ZINC FINGER PROTEIN 454 1110 - -
Psa5g3546 1208 Pfam Tify domain binding domain 708 759 IPR032308 -
Psa5g3546 1208 Pfam PHD-finger 785 826 IPR019787 -
Psa5g3546 1208 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 931 1092 IPR000182 GO:0016407
Psa5g3546 1208 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 10 435 - -
Psa5g3546 1208 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 454 1110 - -
Psa5g3546 1208 Gene3D - 949 1055 - -
Psa5g3546 1208 SMART PHD_3 827 881 IPR001965 -
Psa5g3546 1208 SMART PHD_3 785 826 IPR001965 -
Psa5g3546 1208 ProSiteProfiles Zinc finger PHD-type profile. 783 828 IPR019787 -
Psa5g3546 1208 SMART agenet_At_2 105 162 IPR014002 -
Psa5g3546 1208 SMART agenet_At_2 20 101 IPR014002 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3546 Psa-Chr5 277704080 277714776 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3546 31 386 PHD Transcription Factor Family AT5G58610 34.177 4.64e-58 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Psa5g3546 Agenet 3.1e-15 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3546 - - cam:101498411 1384.39