Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3507 ATGCTTCAAACTTCAACAACAAACACAGCTCAAAACGGATGGAGTTTTCAAGAAACAACAAAACAAGATGGATTAGTATCTTCTGGAATGGATATGAGTATGGTGAAAACAGAAAACTCTTCATCAATTCATAGTTTCACACAAGAGAATAATTCTGTTAGTGGACAAAATAATCACAAAAGAGATTATAGCAATTATCAAACTCAGCCACAGCAACAAGTTCAGACACTTAGTAGAAGATCAGATGATGGATACAATTGGAGAAAGTATGGACAAAAACAAGTGAAAGGAAGTGAGAATCCAAGAAGTTACTATAAATGCACATACCCAAATTGTCCAACAAAGAAAAAAGTTGAAAGAGCTTTAGATGGACAAATTACTGAAATTGTTTATAAAGGTAATCATAATCATCCTAAGCCTGTGGCTAACAAGAGGAACATGAATTCAATGTCTTCCTCTTTGTCGTCACTTGCGAATCCTCCTTCAAGTCAATTTGGAAATGATATGCAAATGGTATTGGTTGCCACGCCGGAAAATTCTTCGGTCTCGGTCGGAGATGATGATTTTGAGCAGAGTTCTCATAAATCGGGTGGAGATCATGAGTATTGTGACGATGATCAACCCCATACTAAAAAATGGAGAATTGAAGGTGAAAATGAAGGAATATCATCAGGAATTGGAAATGGAACAGTGAGACAACCTAGAGTTGTGGTTCAGACAACAAGTGACATTGATATTCTAATTGATGGGTACAGATGGAGAAAATATGGACAAAAAGTAGTAAAGGGAAACCCAAATCCAAGGAGTTACTACAAGTGCACAAACCCTGGATGTCAAGTAAGAAAACATGTGGAAAGAGCTTCACAAGACCTAAGATCAGTGATAACAACCTATGAAGGAAAACACAACCATGACGTTCCTGCACCACGTGGAAGTGGAAACCACTCTATCAACAAACCAATACCTAATATACCAACTATGAGCAACACCATAGGTGTTAACAATGGATTCTTCAACCATGAGATGTTGCAGAATAATGGATTTCCAATGGATTCTTATGTGAATATGAATCAGCAACGTGTGGATAATGTTGTTGGAGGTAGAGCCAAGGAGGAGCCTGTAGTAGAAGATGACTCGTTTTTTGACTCTTTGCTATCTTGA 1161 0.3755 MLQTSTTNTAQNGWSFQETTKQDGLVSSGMDMSMVKTENSSSIHSFTQENNSVSGQNNHKRDYSNYQTQPQQQVQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERALDGQITEIVYKGNHNHPKPVANKRNMNSMSSSLSSLANPPSSQFGNDMQMVLVATPENSSVSVGDDDFEQSSHKSGGDHEYCDDDQPHTKKWRIEGENEGISSGIGNGTVRQPRVVVQTTSDIDILIDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCQVRKHVERASQDLRSVITTYEGKHNHDVPAPRGSGNHSINKPIPNIPTMSNTIGVNNGFFNHEMLQNNGFPMDSYVNMNQQRVDNVVGGRAKEEPVVEDDSFFDSLLS* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3507 386 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 35 341 - -
Psa5g3507 386 Gene3D WRKY domain 234 300 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa5g3507 386 MobiDBLite consensus disorder prediction 39 84 - -
Psa5g3507 386 MobiDBLite consensus disorder prediction 1 20 - -
Psa5g3507 386 Pfam WRKY DNA -binding domain 249 305 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa5g3507 386 Pfam WRKY DNA -binding domain 82 138 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa5g3507 386 ProSiteProfiles WRKY domain profile. 82 140 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa5g3507 386 SMART WRKY_cls 247 306 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa5g3507 386 SMART WRKY_cls 81 139 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa5g3507 386 MobiDBLite consensus disorder prediction 179 205 - -
Psa5g3507 386 MobiDBLite consensus disorder prediction 188 205 - -
Psa5g3507 386 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 35 341 IPR044810 GO:0003700
Psa5g3507 386 SUPERFAMILY WRKY DNA-binding domain 239 307 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa5g3507 386 SUPERFAMILY WRKY DNA-binding domain 80 140 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa5g3507 386 MobiDBLite consensus disorder prediction 39 81 - -
Psa5g3507 386 Gene3D WRKY domain 66 141 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa5g3507 386 ProSiteProfiles WRKY domain profile. 242 307 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3507 Psa-Chr5 273749474 273752416 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3507 56 385 WRKY Transcription Factor Family AT2G38470 52.304 3.98e-103 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Psa5g3507 WRKY 1.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3507 K13424 - gmx:100127385 443.736