Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3504 ATGAGAAAGAGAGTTAAACTTGCATTTATGGTCAACGATTCTGCAAGGAAGATAACTTACACCAAAAGGAAAAAGAGTCTAATAAAAAAGATTGATGAACTCACAACTCTTTGTGGGATTGAAGCTTGTGCTATAATTTATAGCGATTTTCATTCGGAGCCAGAGATTTGGCCTTCCCAATGGGAGGTCCAAAGGGTCGTCACAAAATTCAGAAGTTACTCCGAATTTGAGAAAGGTAAGAAGATGTTGAACCAAGAGAGTTTTTTGGCGCAGAGGATTGTGAAGTCCAACGAACAATTGGTAAAATTGGAGAGGAGCAATTGGGAGGCAGAGAAATCATTGATCTTATATCAATGTCTTTCTAAGGAAAACTTTATCAACACTTTGAACATGAATGTTTTGAATAACCTAGCTTATGATATTAATGAGAAGCTGGCGCAAATTACTTCAAAGGTGAATGAACTTGATACAAATGTAACCCTTTAA 486 0.3642 MRKRVKLAFMVNDSARKITYTKRKKSLIKKIDELTTLCGIEACAIIYSDFHSEPEIWPSQWEVQRVVTKFRSYSEFEKGKKMLNQESFLAQRIVKSNEQLVKLERSNWEAEKSLILYQCLSKENFINTLNMNVLNNLAYDINEKLAQITSKVNELDTNVTL* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3504 161 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 155 - -
Psa5g3504 161 PANTHER MADS BOX PROTEIN 2 155 - -
Psa5g3504 161 CDD MADS_SRF_like 1 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Psa5g3504 161 Gene3D - 12 105 IPR036879 GO:0003677|GO:0046983
Psa5g3504 161 PRINTS MADS domain signature 2 22 IPR002100 GO:0003677|GO:0046983
Psa5g3504 161 PRINTS MADS domain signature 22 37 IPR002100 GO:0003677|GO:0046983
Psa5g3504 161 PRINTS MADS domain signature 37 58 IPR002100 GO:0003677|GO:0046983
Psa5g3504 161 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Psa5g3504 161 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Psa5g3504 161 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 49 IPR002100 GO:0003677|GO:0046983
Psa5g3504 161 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3504 Psa-Chr5 273539382 273540241 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3504 2 152 Type I MADS-box Gene Family AT5G48670 47.682 6.03e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Psa5g3504 SRF-TF 2.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3504 - - mtr:MTR_3g466830 257.299