Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3493 ATGGCTAGGAAGAAGGTGAAACTTGCTTACATTACCTGTGACTCCAAGAGAAGGGGAACATTCAAGAAAAGAAAAAATGGTTTAATAAAAAAGATTGATGAAATAAGCACCTTATGTGGGATTGAAGCATGTGCTATAATATTTGGTGAAAGCGAACCACAACCTGAGGTTTGGCCATCTCCAATGGGAGTCCAAAAGGTATTATCAAGGTTTAAGAGATTGCCTGAAATGGAACAAAGTAAAAAAATGTTGAATCAAGAAAGTTTCATGAAGCAAAGGATTCAAAAAGCACAAGAACATTTAAACAAACAAAAGATTGACAACAAAAGGAAGGAAATGACACATCTTATGTTTCAATGCCTTAATGCTGGTCAGATTTTTGAAAGTGTTAACATGAGTGATCTCAATGATCTATCATGGTTGATTGATCTGAACTTGAAACAAATCGAAAGGAAAATCGATGAGACTCAAGTCAAAGAAGTTGTTGAAAATCGAGTCGAAAATATTAATGGAATGGAGCAAGGAATGATGAACAATGTTGATGTTATGCAAAGACAAAATTGGTCCATGGACTTCAACAACAATATTGGTGATATATTACCATTTGAAAATGGTAATTGTCTACCAAATGGCTTTTGGTCTTAA 645 0.3426 MARKKVKLAYITCDSKRRGTFKKRKNGLIKKIDEISTLCGIEACAIIFGESEPQPEVWPSPMGVQKVLSRFKRLPEMEQSKKMLNQESFMKQRIQKAQEHLNKQKIDNKRKEMTHLMFQCLNAGQIFESVNMSDLNDLSWLIDLNLKQIERKIDETQVKEVVENRVENINGMEQGMMNNVDVMQRQNWSMDFNNNIGDILPFENGNCLPNGFWS* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3493 214 Gene3D - 14 117 IPR036879 GO:0003677|GO:0046983
Psa5g3493 214 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 181 - -
Psa5g3493 214 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa5g3493 214 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Psa5g3493 214 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa5g3493 214 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa5g3493 214 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Psa5g3493 214 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Psa5g3493 214 Coils Coil 94 114 - -
Psa5g3493 214 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Psa5g3493 214 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Psa5g3493 214 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3493 Psa-Chr5 272037700 272038522 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3493 1 154 Type I MADS-box Gene Family AT5G48670 56.494 2.93e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Psa5g3493 SRF-TF 7.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3493 - - gmx:100816084 245.743