Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3481 ATGGCTCAAAAGCTTAGAATGGGAGAACAAGAATTTTCTATTGCTATGGTGATTCTATTTGTTTTGCTAATTAATATGAATATGTTAAGTGTTGAAGGTGATTATGGTGGTTGGGAGGGTGCTCATGCTACTTTCTATGGTGGCGGCGATGCTTCTGGCACAATGGGTGGAGCATGTGGATATGGAAATTTGTATAGTCAAGGATATGGAACAAACACAGCAGCATTAAGCACTGCTTTATTCAACAATGGTTTAAGCTGTGGATCTTGCTATGAAATGAGATGCAATGATGATCCAAGATGGTGCAAACCTGGTTCTATTATTGTAACTGCTACAAATTTTTGTCCACCAAATCCAGCTCAAGCTAACAATGATGGTGGTTGGTGTAATCCTCCTTTGCAACATTTTGATATGGCTGAACCTGCTTTCCTTCAAATTGCTGAATACAGGGCTGGAATTGTTCCTGTCTCCTTTAGAAGGGTGCCATGTATGAAAAAGGGAGGAGTGAGATTCACAATAAATGGCCACTCTTACTTCAACCTAGTTTTGGTCACCAATGTGGGTGGTGCTGGTGATGTTCATTCAATTTCCATCAAAGGCTCAAGAACTTCATGGCAACCAATGTCAAGAAATTGGGGCCAAAATTGGCAGAGCAACTCTTACCTTAATGGACAAAGCCTCTCATTTCAAGTCACCACAAGTGATGGTAGAACTATGACAAGCTATAATGTGGCACCAGCAGATTGGCAATTTGGCCAAACCTTTCAAGGAGCTCAATTTTAG 783 0.4087 MAQKLRMGEQEFSIAMVILFVLLINMNMLSVEGDYGGWEGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMRCNDDPRWCKPGSIIVTATNFCPPNPAQANNDGGWCNPPLQHFDMAEPAFLQIAEYRAGIVPVSFRRVPCMKKGGVRFTINGHSYFNLVLVTNVGGAGDVHSISIKGSRTSWQPMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTMTSYNVAPADWQFGQTFQGAQF* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3481 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 257 IPR007117 -
Psa5g3481 260 SMART dpbb_1 73 158 IPR007112 -
Psa5g3481 260 PRINTS Expansin/Lol pI family signature 37 52 IPR007118 GO:0005576
Psa5g3481 260 PRINTS Expansin/Lol pI family signature 55 73 IPR007118 GO:0005576
Psa5g3481 260 PRINTS Expansin/Lol pI family signature 77 95 IPR007118 GO:0005576
Psa5g3481 260 PRINTS Expansin/Lol pI family signature 151 167 IPR007118 GO:0005576
Psa5g3481 260 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576
Psa5g3481 260 PRINTS Expansin/Lol pI family signature 243 257 IPR007118 GO:0005576
Psa5g3481 260 Gene3D - 24 164 IPR036908 -
Psa5g3481 260 Gene3D - 168 260 IPR036749 -
Psa5g3481 260 SUPERFAMILY PHL pollen allergen 165 257 IPR036749 -
Psa5g3481 260 Pfam Lytic transglycolase 73 158 IPR009009 -
Psa5g3481 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 56 168 IPR007112 -
Psa5g3481 260 Pfam Expansin C-terminal domain 169 246 IPR007117 -
Psa5g3481 260 PANTHER EXPANSIN-A15 10 260 IPR002963 GO:0009664
Psa5g3481 260 PRINTS Expansin signature 68 82 IPR002963 GO:0009664
Psa5g3481 260 PRINTS Expansin signature 95 106 IPR002963 GO:0009664
Psa5g3481 260 PRINTS Expansin signature 107 117 IPR002963 GO:0009664
Psa5g3481 260 PRINTS Expansin signature 126 143 IPR002963 GO:0009664
Psa5g3481 260 PRINTS Expansin signature 143 156 IPR002963 GO:0009664
Psa5g3481 260 PRINTS Expansin signature 167 179 IPR002963 GO:0009664
Psa5g3481 260 PRINTS Expansin signature 179 200 IPR002963 GO:0009664
Psa5g3481 260 PRINTS Expansin signature 214 235 IPR002963 GO:0009664
Psa5g3481 260 PRINTS Expansin signature 243 259 IPR002963 GO:0009664
Psa5g3481 260 SUPERFAMILY Barwin-like endoglucanases 19 186 IPR036908 -
Psa5g3481 260 PANTHER EXPANSIN 10 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3481 Psa-Chr5 270920662 270922944 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3481 11 260 Expansin Gene Family AT2G40610 77.689 6.73e-149 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3481 - K20628 gmx:100499976 467.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3481 5 270920662 270922944 Psa5g3481 5 270920662 270922944 ECH
Psa5g3481 5 270920662 270922944 Psa2g1189 2 89967769 89976058 ECH
Psa5g3481 5 270920662 270922944 Psa2g1189 2 89967769 89976058 PCT