Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3480 ATGGCTAGTTTTCTGAGTGATTACGCGAAGAAAAATGTGGAGAAATTGATAGATGGAGCGCTCAAAGAATTACGATATATATGTTGTTTCACTTGCATTGCTAAGGAATTTGAAGAAAAGAAAGTTAGGTTGGAAGCAGAAAGGACAAGTGTTGGGCAACGTGTTCAAGTTGCAAAAAGAAGAGGTGAAGATGTTCAAGCTACTGCTCTTTTTTGGGAAGATGAAGCTGATAAGATCATTCAAGAAGACACCAAAACAAAACAAAAATGCTTTTTTGGATTATGTCCTGATTGCATTTGGCTATACAAAAGGGGAAAGGAATTGGAAATTAAGAAAGAGCAAATAAGTTTTTTTATGGAAACTGGAAAGGAACTTGCAATAGGTCTCCCTGCTCCTCTTCCAGATGTTGAACGATATTCATCTCGACACTATATTTCTTTTAAAAGTAGAGAATCGAAATATAATGAGCTTTTGGATGCACTGAAAGATGAAAACAATTATATAATAGGGTTGCAAGGGATGGGGGGAACAGGAAAAACTACATTGTCCAAAGAAGTGGGTAAGATACTTAAGCAATCCAGACAATTTACGTGCATTATTGTTACGACAGTGTCATTTTCTCCTGATATTAAAAAGATTCAAGATGATATTGCTGGGCCCTTGGGATTGAAGTTTGATGACTGTAGTGAATCAGACCGACCTAAAAAACTATGGAAAAGATTAACAAATGGTGAAAAGATTCTTGTAATACTTGATGATGTTTGGGGAGATATTGATTTTGAAGAAATAGGGATTCCATATAGTGACAATCACAAAGGTTGTAGAGTTCTTGTAACCACGCGCAATGTGGAGGTATGCAACACATTAGGATGCAGTAAGACAATCAGATTGGAGCTCTTGTCTTCAGATGATGCATGGGAAATGTTCAAACGACATGCTGGTCTGACTGAAACTTCAACTAGAAGTTTGCTAGACAAGGGTCGTAAAATTGCAGACGAATGCAAAGGATTACCAATTGCAATTGCTGTTATCGCAAGTAGTTTGAGGGGAAAACAACATCGGGAAGAATGGGATTTTGCCTTAAAATCCTTGCAGAAATATGCTTCAATGCATGATATTGATGATGATGATGATGATTTGGTTAAAATATATGAACGCTTGAAGTTTAGCTATGATAATATGAACGATGGAAAGGCAAAGAGACTATTCCTGTTGTGTTCTGTATTTCGAGAAGATGAAGAAATTCCTACTGAAAGTTTAATCAGACTTGGCATAGGAGCTGGCCTTTTCGGGGAAGATTATGGCAGCTACGAAGATGCTCGAACCCAATGGATAGCAAACAAAGAGATTCAAACAGTAAAGTTGTATGATAAAAATAAAAAAAGAATGGTTGAAAGGGAGAAGAGTATTAAATATTTGTTATGCGAAGGAAAGCTAAAAGACGTGATATTGTGCAAGCTTGAGAGTTCAAAGCTCCAAATTCTAATTGTCAATATCGACAGTGATGATGATGATAGGCACAAGGAGAAAATCGAAGTCCCAAATTCATTTTTTAAAAATATTAGTGGCCTTCGTGTTTTTCATTTCTCTAGTTATATTTATCCAACAAATCTATCATTACCTCACTCAATTCAGTTGTTGAAGAATATTCGATCTCTTCTTTTTCATGGTTTTGATTTAGGTGATATCTCTATTTTGGGAAATCTGCAAAGTCTTGAGACACTTGATTTGGGAATGTGTGAAATTAATGAATTTCCAGAAGGAATGGCAAAACTACCGAATCTTAGATTATTGAGTTTGAGATTTTGTGAAATTAGAAGGAATAATCCATTTAAAGTGATTGAAGGATGCTCCTCACTTGAAGAGTTGTATTTCATAACCAGTTTTAATGATTGTTGCCGAGAAATATCCTTCCCACTGTTACAAAGATTTATAGTGGATGATGGGTATACAAATGAGAATGTGTCAGTATCAAAATATTTGTCTCTTTTAGACAAAAAAGATAAATATTTACTCCCCAAAAAACAATTCAAGGACTGTATACAAGCAGTAGAGGTTCTTAGACTAACAGATGGAATCTGGTGGGAATGGGTAAATATCATACCGGAAATTGTTCCTATGGATTATGGTATGAATGATCTAGTCGAGCTTAAATTGAGTTGCATTCCAAAGCTTAAGTGTCTCATTGACACTAAGCATGGTAATTCTCAAGTAACAACTGTGTTCTCCAAATTAGTTATACTACATTTGGATGAAATGGAAAGTTTGGTAGAATTGTGCAATGGTCCCCTTTCCTTTGATTCTCTCAAGAGTTTAGAGGAGCTGACCATCATCAGCTGCGATCAATTGCAAAGCTTATTCACGTGCAGCCTAAACCTCTTCAATTTGAAGACATTGTTATTGCTACAATGTCCGATGTTGATCTTCTCCCTATTTCAACTGACTACGTCTGGTAGCCTAGTGTCATTGGAGGTATTGAGAATAACTGGCTGCAAACATCTCGAATACATAATAATAGATGAAAGAAAAGTGAAGGAATCGAGAGGAGAAATAGTTGCTGCTGATGATGATAATGATCGCAAGATGAGTCAAGACTCAATATTTCCAAAACTGAAACATCTATATATTGAACACTGCCATGGATTAAAATTTATATTTTCAATTCAGGATCTTCCGGCACTGGATTTTTTCTCAATATCTGATTGTGAGAAGCTGCAATCCATATTTGGCCATGATTCAATAAATAATTTTCTAAAATGTGATGTTACCACGCCTTCTCCCATTTCTAGAGATGCTTCCAAGCCAGGAAAACAATTAGAACCTTTGAAATGCAGTACCTTTTCATGGACCAATATATGTTGCTTTGGTAAAAAATCAAGGACTACTGAAGATCAACAGCAGGATCTGCCTTCGAAGACTACCAGCCTTTTGGAGAATTCAATTTCCCTCAATTACCTTACAGTGATAAAAATCAGGCGATGTAAAAAATTGGAAATTGTGTTTTCCACATCTATATTAAGATGCCTACCACAATTGGTTGCTCTAAGAATAGTAGAATGCAAAGAGTTGAAGCATATTATTGAAGATGATTTGGAGAATGACAAATCCATAAATTTTGAGTCTACAAACACATACTTTCCAAAGCTAGAAATACTTATTGTAGGAAACTGCAACAAACTCAAATGTGTCTTTCCGACTTCCGTATGTAAAAAGCTTCCAAAGCTAAAAGTTCTGATAATAAGAGAAGCATATGGGCTGCAACAAATATTCAAAACCGAAGGTGATGATCAGAAACTCGAGATTCCAAATCTGGGAGTTGTATCATTTATCAATCTGCCAAACCTCTCCGATGCTCAAAAAGTGCACTTTGAGGCCGTAAATTATCGATTTCTACATAGTTGTCATAAACTGTCTCTGACTTCAGCATCAAAATCCGACACCATTGATAACATTATTGATCCTTTGTTCGACATAGATTCTGATATCTATATGGAACTCATGGTTCTATTGCAATCGCAACCATTAAAAGAAGCGTACAAAGGCCACCACACCTGGAATCAAAGTCCTACTTCAGAAATCACTAGAGAATTTGCAGATGGGGTTGGGATTGAAGCGGAAGCAGCATTAGGACACATATTGACTTCTCCACAGATGTTATTGAATGAACAATCTGGATCAACAACTATTGACGAACAAGACAACATTCACTTGGAGAAACTGAAACGACCAATAAACCTCAGGTATACCTAA 3750 0.3613 MASFLSDYAKKNVEKLIDGALKELRYICCFTCIAKEFEEKKVRLEAERTSVGQRVQVAKRRGEDVQATALFWEDEADKIIQEDTKTKQKCFFGLCPDCIWLYKRGKELEIKKEQISFFMETGKELAIGLPAPLPDVERYSSRHYISFKSRESKYNELLDALKDENNYIIGLQGMGGTGKTTLSKEVGKILKQSRQFTCIIVTTVSFSPDIKKIQDDIAGPLGLKFDDCSESDRPKKLWKRLTNGEKILVILDDVWGDIDFEEIGIPYSDNHKGCRVLVTTRNVEVCNTLGCSKTIRLELLSSDDAWEMFKRHAGLTETSTRSLLDKGRKIADECKGLPIAIAVIASSLRGKQHREEWDFALKSLQKYASMHDIDDDDDDLVKIYERLKFSYDNMNDGKAKRLFLLCSVFREDEEIPTESLIRLGIGAGLFGEDYGSYEDARTQWIANKEIQTVKLYDKNKKRMVEREKSIKYLLCEGKLKDVILCKLESSKLQILIVNIDSDDDDRHKEKIEVPNSFFKNISGLRVFHFSSYIYPTNLSLPHSIQLLKNIRSLLFHGFDLGDISILGNLQSLETLDLGMCEINEFPEGMAKLPNLRLLSLRFCEIRRNNPFKVIEGCSSLEELYFITSFNDCCREISFPLLQRFIVDDGYTNENVSVSKYLSLLDKKDKYLLPKKQFKDCIQAVEVLRLTDGIWWEWVNIIPEIVPMDYGMNDLVELKLSCIPKLKCLIDTKHGNSQVTTVFSKLVILHLDEMESLVELCNGPLSFDSLKSLEELTIISCDQLQSLFTCSLNLFNLKTLLLLQCPMLIFSLFQLTTSGSLVSLEVLRITGCKHLEYIIIDERKVKESRGEIVAADDDNDRKMSQDSIFPKLKHLYIEHCHGLKFIFSIQDLPALDFFSISDCEKLQSIFGHDSINNFLKCDVTTPSPISRDASKPGKQLEPLKCSTFSWTNICCFGKKSRTTEDQQQDLPSKTTSLLENSISLNYLTVIKIRRCKKLEIVFSTSILRCLPQLVALRIVECKELKHIIEDDLENDKSINFESTNTYFPKLEILIVGNCNKLKCVFPTSVCKKLPKLKVLIIREAYGLQQIFKTEGDDQKLEIPNLGVVSFINLPNLSDAQKVHFEAVNYRFLHSCHKLSLTSASKSDTIDNIIDPLFDIDSDIYMELMVLLQSQPLKEAYKGHHTWNQSPTSEITREFADGVGIEAEAALGHILTSPQMLLNEQSGSTTIDEQDNIHLEKLKRPINLRYT* 1250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3480 1249 Gene3D - 135 295 IPR027417 -
Psa5g3480 1249 SUPERFAMILY RNI-like 868 1085 - -
Psa5g3480 1249 Gene3D Ribonuclease Inhibitor 787 918 IPR032675 -
Psa5g3480 1249 Gene3D Ribonuclease Inhibitor 919 1098 IPR032675 -
Psa5g3480 1249 SUPERFAMILY L domain-like 513 908 - -
Psa5g3480 1249 Gene3D - 299 395 IPR042197 -
Psa5g3480 1249 PANTHER - 56 886 - -
Psa5g3480 1249 PANTHER - 974 1117 - -
Psa5g3480 1249 Pfam NB-ARC domain 152 393 IPR002182 GO:0043531
Psa5g3480 1249 Gene3D Ribonuclease Inhibitor 506 666 IPR032675 -
Psa5g3480 1249 PRINTS Disease resistance protein signature 168 183 - -
Psa5g3480 1249 PRINTS Disease resistance protein signature 241 255 - -
Psa5g3480 1249 PRINTS Disease resistance protein signature 334 348 - -
Psa5g3480 1249 PRINTS Disease resistance protein signature 567 583 - -
Psa5g3480 1249 Coils Coil 34 54 - -
Psa5g3480 1249 PANTHER AND NB-ARC DOMAIN DISEASE RESISTANCE PROTEIN, PUTATIVE-RELATED 974 1117 - -
Psa5g3480 1249 PANTHER AND NB-ARC DOMAIN DISEASE RESISTANCE PROTEIN, PUTATIVE-RELATED 56 886 - -
Psa5g3480 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 406 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3480 Psa-Chr5 270846465 270861738 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3480 169 603 WRKY Transcription Factor Family AT5G45050 22.244 1.45e-10 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3480 - - mtr:MTR_3g062320 1282.7