Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3462 ATGATGAAGAAAATTAATGAACTCAGCACCCTTTGTGGCATAGATGCTTGTGCAATAATCTTTGACGAAAACTATCCTGAACCAGAGGTTTGGCCATCCACCACACAAGTAAGAAGTGTGTTATCCAGGTACATGAGTTTGTCTGAACTTGAACGGAGCAAAAAGATGCTTAATTTAGAGACCTACTTGATGCAAACCATTGAGAAAGCTCAAGAGTTGTTGAAGAAGCAAATGGAAGATAATCAAAAGAAGGAAATAGCAATTCTTATCGACCAATTTATTCATACCGGTGAATATAATATAGGAAATGTGAACTTGAATGATGTAACATCTTATATTGATAAGAATTTGAAGGAAATAGAGAAGAGGATTGATTCAATGGAAATCCAAGGGAAAAAAGAGGTTGGAAATTGA 414 0.3527 MMKKINELSTLCGIDACAIIFDENYPEPEVWPSTTQVRSVLSRYMSLSELERSKKMLNLETYLMQTIEKAQELLKKQMEDNQKKEIAILIDQFIHTGEYNIGNVNLNDVTSYIDKNLKEIEKRIDSMEIQGKKEVGN* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3462 137 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 1 24 IPR002100 GO:0003677|GO:0046983
Psa5g3462 137 Coils Coil 64 87 - -
Psa5g3462 137 SUPERFAMILY SRF-like 1 68 IPR036879 GO:0003677|GO:0046983
Psa5g3462 137 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 1 128 - -
Psa5g3462 137 PANTHER MADS BOX PROTEIN 1 128 - -
Psa5g3462 137 Gene3D - 1 91 IPR036879 GO:0003677|GO:0046983
Psa5g3462 137 CDD MADS_SRF_like 1 58 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3462 Psa-Chr5 269844077 269844520 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3462 1 125 Type I MADS-box Gene Family AT1G65300 40.157 5.60e-26 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Psa5g3462 SRF-TF 7.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3462 - - cam:101511888 174.096