Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3460 ATGAGTAGAAAGAAGGTGAAACTTCAATACATAATCAATCAATCTAGTAGGAAGGCATCCTACAACAAAAGGAAAACATGTTTATTGAAAAAGGTTAAGGAAATCAGCATCCTTTGTGGGATAGAAGCATGTGTCATAATCTATGGTGAAAACAGTGTTGAACCAGAGGTTTGCCCACCTAGTCCTGGAACACTAAATGTGGTACTCAAGTTCCGCAGTGTTCCTGAATTCGAACGATACAAAAAGACTATGGATTTGGAAGGTTTCTTGAGGCAAAGCATAGAGAAATCCCAGGAGCAGTTGAGAAAACAAATTTTGGAGAACAAGAAGAAAAGATTTATCAATTTAATTGATATAGCCCTTTTCAATAAACATAACAATACTGATCTTGTGAACATAAATGAAGTCAATGATCTTGTGAACATGAGTGAACTCAATGATCTGACGGAATTTATTGATAGCAATATCAAGGAAGTTGAAAAAAAGTTGAATTCAGTGAATGTTGAAGCCGATGAGTATGTTGGTAATGGAATTGAAGCTATGACTGGAATAGAGCAGCAATATAATATTGGAAATGCACAAGGTGTGATGAATGGAGGAAATATGCAAGCTGATGTCCATGGTTTGGATACGAACATGGGTTTTGGGATCCAAAGTGATTATCAATATCTTTCATGGGACTACTCCATCATACCATATCATGATTATAATATGGACAGAGATGATGTTTGA 732 0.3579 MSRKKVKLQYIINQSSRKASYNKRKTCLLKKVKEISILCGIEACVIIYGENSVEPEVCPPSPGTLNVVLKFRSVPEFERYKKTMDLEGFLRQSIEKSQEQLRKQILENKKKRFINLIDIALFNKHNNTDLVNINEVNDLVNMSELNDLTEFIDSNIKEVEKKLNSVNVEADEYVGNGIEAMTGIEQQYNIGNAQGVMNGGNMQADVHGLDTNMGFGIQSDYQYLSWDYSIIPYHDYNMDRDDV* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3460 243 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Psa5g3460 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa5g3460 243 Coils Coil 156 176 - -
Psa5g3460 243 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 178 - -
Psa5g3460 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa5g3460 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa5g3460 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Psa5g3460 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 178 - -
Psa5g3460 243 CDD MADS_SRF_like 3 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Psa5g3460 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Psa5g3460 243 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Psa5g3460 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3460 Psa-Chr5 269823800 269824984 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3460 1 163 Type I MADS-box Gene Family AT5G48670 42.945 2.76e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Psa5g3460 SRF-TF 5.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3460 - - mtr:MTR_2g016210 226.868