Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3458 ATGAGTAGAAAGAAGGTGAAACTTCAATATATAATCAATCAATCAAACAGGAGGACAACCTTCAAAAAAAGGAAAACATGTTTATTGAAGAAGGTTAACGAAATCAGTACCCTTTGTGGTATAGGAGCATGTGTCATAATATATGGTGAAAACAGTGTTGAACCAGAGGTTTGGCCACCTGGTCCAGGAACACTAAATGTGGTACACAAATTCCGTGGTGTTCCTGAATTCGAACGAAGCAAAAAGATGATGGATTTGGAGGGTTTCTTGAGGCAGAGCATAGAGAAATCCCAAGAACAGTTGAGAAAACAAATGTTGGAGAACAAGAAGAAGAAATTTACCAATTTCATTGATAAAGCCCTTATCAATAAACATAACAATACTGATCTTTTGAGCATTAATGAACTCAATGATCTTGTGAACATGAATGCACTCAATGATCTGACAAAATTTATCGATATCAATATTAAAGAAGTTGAAAAAAAGTTGAATTCGGTAAATGTTGAAGTCGGTGAGCATGTTGGTAATGGAATTGAAGTTATGACTGGAATAGAGCAGCAAGAAAATATTGGAAATGCACAAAGTATGATTAATGGAGCAAATATGCAGGTTGATGTCCATGGTTTAGATACAAACATGGATTATGATATCCAAAGTGATTATCGATATCCTTCATGGGACTACTCCACCATACCATATCATGATTATAATATGGACAGAGATGATCTTTGA 732 0.3497 MSRKKVKLQYIINQSNRRTTFKKRKTCLLKKVNEISTLCGIGACVIIYGENSVEPEVWPPGPGTLNVVHKFRGVPEFERSKKMMDLEGFLRQSIEKSQEQLRKQMLENKKKKFTNFIDKALINKHNNTDLLSINELNDLVNMNALNDLTKFIDINIKEVEKKLNSVNVEVGEHVGNGIEVMTGIEQQENIGNAQSMINGANMQVDVHGLDTNMDYDIQSDYRYPSWDYSTIPYHDYNMDRDDL* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3458 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 204 - -
Psa5g3458 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa5g3458 243 CDD MADS_SRF_like 3 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Psa5g3458 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa5g3458 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa5g3458 243 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 204 - -
Psa5g3458 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Psa5g3458 243 Gene3D - 13 118 IPR036879 GO:0003677|GO:0046983
Psa5g3458 243 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Psa5g3458 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3458 Psa-Chr5 269757478 269758727 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3458 1 183 Type I MADS-box Gene Family AT5G48670 41.935 2.12e-35 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Psa5g3458 SRF-TF 4.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3458 - - mtr:MTR_2g016210 231.491