Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3457 ATGGCCAGGAAGAAGGTCAAACTTGCATACATAACTTGTAACTCGAAGAGGAGGGAAACATTCAGAAAGAGGAAATCGGGTATAATCAAGAAAGTGAATGAAATCAGCACTCTTTGTGGGATAGAAGCATGTGCAATAATCTATGATAGAAACAATCCTCAACCAGAGGTTTGGCCATCAGATGTCGGAGTCAAAAATGTTTTGTTCAAGTTTAGGAGTTTGCCTGAACTTGAACGAAGCAAAAAGATGGTGGATCAAGAAGCTTTCTTGAGGCAAAGCATAGCGAAAATCTACGAGCAGTTGAAGAAACAAAGGGAGGAAACCAGAAAGAAGGAAATGACCAATATCATTCATCATTACATTCAAAGTGGTGAATTTAATGCTATGAATTTAATGAGCAAACACGATCTCAATGATTTGTCTTCTTTTATCGATGAAAATCTGAAGGAAATCGAGCAAACGATGAAAGGAGTGCCAACCGAAGTCCGAGAGGAGGTCAGAAATGGAGCTGAAGTGATGAATGGAAGAGAGGTGGTGCATGAAAATATTAATCATGTCCAAGGGCAGGTGAATGGAGGAAATGAACAACTAGCAAATATGGGTCAGTTTGTCCAAGGAAATGAGAACAACATTGGTGATGAAATGCCACTTAATTTCCCACAATGGCCTATGGATTTTTCCATGTTTCAATTTCCATTTATTAACGATGGTCCAAATGGATTTTAA 726 0.3871 MARKKVKLAYITCNSKRRETFRKRKSGIIKKVNEISTLCGIEACAIIYDRNNPQPEVWPSDVGVKNVLFKFRSLPELERSKKMVDQEAFLRQSIAKIYEQLKKQREETRKKEMTNIIHHYIQSGEFNAMNLMSKHDLNDLSSFIDENLKEIEQTMKGVPTEVREEVRNGAEVMNGREVVHENINHVQGQVNGGNEQLANMGQFVQGNENNIGDEMPLNFPQWPMDFSMFQFPFINDGPNGF* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3457 241 Gene3D - 14 127 IPR036879 GO:0003677|GO:0046983
Psa5g3457 241 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 164 - -
Psa5g3457 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa5g3457 241 Coils Coil 91 111 - -
Psa5g3457 241 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Psa5g3457 241 PANTHER MADS BOX PROTEIN 2 164 - -
Psa5g3457 241 SUPERFAMILY SRF-like 1 85 IPR036879 GO:0003677|GO:0046983
Psa5g3457 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa5g3457 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa5g3457 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Psa5g3457 241 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Psa5g3457 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 52 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3457 Psa-Chr5 269586303 269587649 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3457 1 151 Type I MADS-box Gene Family AT5G48670 52.632 6.58e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Psa5g3457 SRF-TF 1.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3457 - - cam:101496969 298.13