Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3455 ATGACAAGAAAAAAGGTGAAACTTGCTTTCATTGAGAATGATACCTCAAGGAAAGCAACTTACAATAAAAGGAAGAAGGGTTTATTGAAGAAAGTTGATGAACTAACAACTCTTTGCGGAATCGATGCGTGTGCTATAATTTATGGCCCGTACGATTCTCAACCTGAGATCTGGCCTTCGCCGTTGGGAGTTCAACAGGTGCTTTCGAAATTCACGACAATGCCTGAAATGGAACAAAGCAAAAAAATGGTGAATCAAGAGAGTTTTATAAAACAAAGGATTTCAAAGGCTCAAGAGCAAGTAAAAAAGCAAAGGAAAGACAACAGAGAGAAAGAGATAACCATGTTGATGTTTCAATGTCTTAATGTTGGGAAGATCGTGCAGAACGATATGTCGGTGAGCGATTTGAATGATCTTGCTTGGATGATTGATCAGAATCTGAAGGAGATAGGTAGAAGGATGGAACCAGGTGATAACAATATTAATATTCATCAAAATCAAAGTGGAAATCAACTTACGACGGTTCAAAGCCAAGTTCAGCTTCAAATGGCGCCACAGTTACCACCACCGCCGCCGCCACCAACTGCATTAAATAATGAAGAAATTGCTATGATGGGTCATGGCCATGTTGGGATGGCTATGAATAATAATGACATCATTCAAAGGCAGTTGTTTATGGAGATGATGATGAATGGTGGTGGAAATGAAACAATTCCATTTGGTTATGATGCCAATCTTCACAATGGATTTTGGCATAATAGACTATCTTGA 771 0.3891 MTRKKVKLAFIENDTSRKATYNKRKKGLLKKVDELTTLCGIDACAIIYGPYDSQPEIWPSPLGVQQVLSKFTTMPEMEQSKKMVNQESFIKQRISKAQEQVKKQRKDNREKEITMLMFQCLNVGKIVQNDMSVSDLNDLAWMIDQNLKEIGRRMEPGDNNINIHQNQSGNQLTTVQSQVQLQMAPQLPPPPPPPTALNNEEIAMMGHGHVGMAMNNNDIIQRQLFMEMMMNGGGNETIPFGYDANLHNGFWHNRLS* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3455 256 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 212 - -
Psa5g3455 256 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Psa5g3455 256 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Psa5g3455 256 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa5g3455 256 Coils Coil 94 114 - -
Psa5g3455 256 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 212 - -
Psa5g3455 256 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa5g3455 256 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa5g3455 256 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Psa5g3455 256 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Psa5g3455 256 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3455 Psa-Chr5 268969184 268969954 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3455 1 155 Type I MADS-box Gene Family AT5G48670 63.871 9.34e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Psa5g3455 SRF-TF 5.8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3455 - - gmx:100813231 268.855