Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3454 ATGACTAGAAAAAAGGTGAAGCTTGCTTTCATTGAGAATGATACTGCAAGGAAAACAACTTACAAGAAAAGGAAGAATGGTTTAGTGAAAAAGGTTGATGAACTAACAACGCTTTGCGGCATCGATGCTTGTGCTATCATTTATGGCCCCTACGATGCTCAACCTGAGATCTGGCCGTCGCCGTCGGGAGTCGACAAGGTGCTTTCGAAATTCTTGACTGTGCCTGAGTTAGAACAAGGCAAAAAGATGGTGAATCAAGAGAGTTTCCTGAAACAAAGGATTTTGAAGGCTGAAAAGCAATTTATAAAGCAATGGAGAGACAACAGAGAGAAAGAGACAACCATGTTCATGTTTCAATGTCTCATTGCTGGGAATATCGTGCAGAACGATATCTCCCCGAGTGGTTTGAATGATCTTGCTTGGATGATCGATAAGAATCTGAAGGAGATTGGCAGAAGGATGGAATCAGGTGATAGCAACAGTAATATTCATCAAAACCAAAGTGAAAATCAAATCATTACGGCACAAAGCCAAGTTCAACTCCAAATGGCACCGCCACTGCTACTACCACCGCCGCCGCCACCACCAACAACCGCACCTAATAACGAAGAAATTGCAATGATGAGCCATGGCAATAACCACATCATGTTTATGGAGATGATGATGAATGGTGCTGAACCTGATGAAACAATTCCGTTTGGTTATGACGCCAATCTACAGAATGGATTTTGA 732 0.4235 MTRKKVKLAFIENDTARKTTYKKRKNGLVKKVDELTTLCGIDACAIIYGPYDAQPEIWPSPSGVDKVLSKFLTVPELEQGKKMVNQESFLKQRILKAEKQFIKQWRDNREKETTMFMFQCLIAGNIVQNDISPSGLNDLAWMIDKNLKEIGRRMESGDSNSNIHQNQSENQIITAQSQVQLQMAPPLLLPPPPPPPTTAPNNEEIAMMSHGNNHIMFMEMMMNGAEPDETIPFGYDANLQNGF* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3454 243 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Psa5g3454 243 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Psa5g3454 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 210 - -
Psa5g3454 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa5g3454 243 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Psa5g3454 243 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 210 - -
Psa5g3454 243 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Psa5g3454 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa5g3454 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa5g3454 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3454 Psa-Chr5 268937163 268937894 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3454 1 155 Type I MADS-box Gene Family AT5G48670 60.645 3.44e-56 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Psa5g3454 SRF-TF 3.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3454 - - gmx:100813231 229.95