Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3453 ATGAATCGGACTATTATTGTCAGGAGGAATTATCTTCACTTCATTAAGAAATATCAGAGGTATGAGAAGAGGCATTCCAACATTCCAGCTCATGTGTCACCTGCCTTCCGTGTTAAGGAAGGTGATCATGTCATTATTGGTCAATGCAGGCCACTCTCCAAGACAGTGAGGTTCAATGTATTGAAAGTCATCCCAGCTGGATCATCCAGTGGTGCAAAGAAGGCATTTCTGGCATATGAAGATTTGGTTGGCACTCTTAGTATAGAGATTTATCATCTATGTTGA 285 0.4105 MNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPAFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFLAYEDLVGTLSIEIYHLC* 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3453 94 Pfam Ribosomal protein S17 1 62 IPR000266 GO:0003735|GO:0005840|GO:0006412
Psa5g3453 94 PANTHER BNAA06G38660D PROTEIN 1 76 - -
Psa5g3453 94 PRINTS Ribosomal protein S17 family signature 8 31 IPR000266 GO:0003735|GO:0005840|GO:0006412
Psa5g3453 94 PRINTS Ribosomal protein S17 family signature 41 51 IPR000266 GO:0003735|GO:0005840|GO:0006412
Psa5g3453 94 PRINTS Ribosomal protein S17 family signature 51 58 IPR000266 GO:0003735|GO:0005840|GO:0006412
Psa5g3453 94 SUPERFAMILY Nucleic acid-binding proteins 1 67 IPR012340 -
Psa5g3453 94 Gene3D - 1 79 - -
Psa5g3453 94 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 1 76 IPR000266 GO:0003735|GO:0005840|GO:0006412
Psa5g3453 94 ProSitePatterns Ribosomal protein S17 signature. 41 53 IPR019979 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3453 Psa-Chr5 268931877 268932664 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3453 1 78 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 88.462 2.62e-47 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3453 K02949 - gmx:547984 156.377