Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3452 ATGAAAACAATGGACAAAGACATATCAAACTGGGTCATGGAGTTTCTCCTTCGAAGCTCCGTACCCGATTCACTCATTCAAAAAACCCTAACCGTTCTTCCACTTTCCGGCGCCGATTCTCGCCTTAAAAAAACCCTCCTCCTCCGTACCCTCCAAACTCACCTCCGCAACGCCTCCCTCTCGGAAACCTCTCTCCAAATCATCGAACACCTAGAGGAGCTTTACCGCATCGACGCGGTTCCCATCTCCGATGCAATGCGGAGCGCTTATTGTTCTGTCGCTGTTGAATGTACCGTTAAATATCTTATTACCGCTCATGAGGATCCGTCCGGGGAATACTTTTCCGCTGTTCGACGGATCTGGCGTGGTCGTGTTGTTCAATTGTCGGCTGAGGTGCGGCGGAGCGAGCTTCTTTCAGATGAGTTGTCGCGTTGGGGGGAAGACATTGAAGCGGCGCTTTGGGATGTTAAGGTTTCGGAGAGGCTTGCAGGTTTGAACACAAGGAGAGATGCGATGAATGAGGTTAACAGGTTTTTGAAGGATGCGTGGCAAATTATGGGACCTTCTTTTCTTGATTCGATGGCATTGTCTTCTAAAGGGAATGGGTTGCGTCCTGAAGGTGTTTGTGGAATTGCTTCAGGTAGTGAAAAGTTGAGAAAGAGTGATGGTAGGTTAGAAAGTTCGGGAAAGGAGAAAATGTGCTCTGTTGGGGATGATAACAATGATAATGTTGATGATGATGGTGATGGTGATGATGATGACGTGGCAGTGATGGGTGAAAACCATGGCAATAAACGATTGGAAGATAGAGTTGGTACTTCTGTTGATGCAAATCAGGAAGTGGGTGGGTGTGATTCTTCAAATGTAGATAAAGAATTTCGGAAAGACAATATTCAGCTCAAACGCAAGCACTCTGCACTACGAACATGCCATAGGGGAGTTAAAGTCTCTGGTGCAGAGGACGTGAGTCCATCAAATTTATCGAGTAAATATAAAATCTTGCCTAGTGCTGAAGTAAAGAAAGTTCGGGAATCCCTTAAATCAAGTTCTATGGAGTTAAAGGCATTGGTCAAGGATCCTCTTCCCGATGCATTGCGATCATCTGAAGATGTAAGATCCAAATTAGCAACAGAACATATAAATCTTGGGCCACCCAGTGAAAATCAGAGTGGACATGTAGATGTACGACATTCAGATAGATGCAAAAGCATTGTACTTTATCAGGCTAAGGCTAATGATGCCAATCTTGCAAAGAAGCCTTCTGTTCCTTGTAGTAATGATCGCCGCCCCAACTTTATGGGGCGGGCAAGTTCTGCCCATACTTACGAGTGGAATGATTCAATAGATAACTCACCGCAAGAAAGACTGCCAAGAAGGAAGAAAAGGAAATGGACTTCACTGGAAGAGGAGACACTAAGGGCTGGTGTAAAAATGTTTGGAGAAGGAAACTGGAGGACAATTCGTGACTTTTACAGCAACATATTCGAATATAGAAGTGGAGTTGATCTAAAAGACAAGTGGAGAAATATGACGCGGTGA 1539 0.4483 MKTMDKDISNWVMEFLLRSSVPDSLIQKTLTVLPLSGADSRLKKTLLLRTLQTHLRNASLSETSLQIIEHLEELYRIDAVPISDAMRSAYCSVAVECTVKYLITAHEDPSGEYFSAVRRIWRGRVVQLSAEVRRSELLSDELSRWGEDIEAALWDVKVSERLAGLNTRRDAMNEVNRFLKDAWQIMGPSFLDSMALSSKGNGLRPEGVCGIASGSEKLRKSDGRLESSGKEKMCSVGDDNNDNVDDDGDGDDDDVAVMGENHGNKRLEDRVGTSVDANQEVGGCDSSNVDKEFRKDNIQLKRKHSALRTCHRGVKVSGAEDVSPSNLSSKYKILPSAEVKKVRESLKSSSMELKALVKDPLPDALRSSEDVRSKLATEHINLGPPSENQSGHVDVRHSDRCKSIVLYQAKANDANLAKKPSVPCSNDRRPNFMGRASSAHTYEWNDSIDNSPQERLPRRKKRKWTSLEEETLRAGVKMFGEGNWRTIRDFYSNIFEYRSGVDLKDKWRNMTR* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3452 512 CDD SANT_TRF 462 512 - -
Psa5g3452 512 MobiDBLite consensus disorder prediction 219 247 - -
Psa5g3452 512 SUPERFAMILY Homeodomain-like 457 511 IPR009057 -
Psa5g3452 512 ProSiteProfiles Myb-like domain profile. 456 511 IPR001005 -
Psa5g3452 512 Pfam Myb-like DNA-binding domain 461 510 IPR001005 -
Psa5g3452 512 PANTHER MYB TRANSCRIPTION FACTOR 4 512 - -
Psa5g3452 512 Gene3D - 454 512 - -
Psa5g3452 512 SMART sant 460 512 IPR001005 -
Psa5g3452 512 PANTHER MYB TRANSCRIPTION FACTOR 4 512 - -
Psa5g3452 512 MobiDBLite consensus disorder prediction 219 239 - -
Psa5g3452 512 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 456 512 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3452 Psa-Chr5 268917279 268922200 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3452 464 510 Single Myb Histone (SMH) Gene Family AT1G15720 53.191 1.92e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa5g3452 Myb_DNA-binding 1.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3452 - K11111 aprc:113849788 567.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3452 5 268917279 268922200 Psa5g3452 5 268917279 268922200 ECH