Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3449 ATGTCAACACATCTGCAAGATCCACCTTCAAACTCAAACTACAATCCCAATGTCCCATCATCCACACCCTCTCCCAACCCCTTCATCCGCGGCAGCGCCGCTCCACACGCCGCCGCCGCCGCCGAATCCTACCATCACCACCGGAGAGCGCACTCCGAGAACAACTACCGCATTCCCGACGAAATGATGGACCTATCACCGTCAAATCCGTTGAACGGAGGAGGCTCCTCCACCGCGAGCCTGGAGGAGATCGGATCGGAAGACGATCTGTTCTTCACGTACATTGACGTGGAGAAGCTCGGAGGATGTAGTAATGGTTCGAATCGTGGAGGAAATGGATCGGATCAAAGCGGTTACGGTAACGGAGCGGGGACTAGCGGTCAAAACGACGGGGAGAAGAGTCTGAACGAAGCTACTACGCCGAGAACGAGGCATAGGCATAGTTGCTCCGTCGACGGTACAACGTCGACGAGTATGTTGGGAGAGATCATGGATGCTAAGAAAGCTATGCCTCCGGATAAACTCGCCGAGCTTTGGACTCATGATCCAAAGCGTGCCAAGAGAATTCTTGCAAATAGACAGTCTGCTGCACGTTCAAAAGAGAGAAAGGCTCGATATATACAAGAGCTTGAGCGCAAGGTTCAGACCCTTCAAACAGAGGCCACAACTCTCTCTGCTCAATTGACATTATATCAGAGGGACACAAGTGGTCTGAGTTCTGAAAATACCGACCTTAAGCTCCGTCTGCAAGCCATGGAACAACAGGCACACCTTCGAGATGCTCTTAATGACGCGTTGATGAAGGAAGTTGAGAGGCTTAAGATTGCTACCGGAGAAGCAATGAACCCTTCTGAATCTTATAATCTTGGAATGCACCCGATGCAATTCACAGAGTCAAATTTCTTTTCAATGCCACAACAACATTCAGGTCCTTCTGGTCACCTGAACATACAATATCCTCAATTCAGCCACTCTCCATCTAACATGCCAACTCATCAGCTGCAACAAACCAATTCTCGCCAAATGTCAGAGATGTGGCAAAACGATCACCTCGGTAGTTTTAAGGGACTTGACATCAGTAGCAAAGGATCCGCCCTCGTGAAGTCCGAAGGTCCCTCAATATCTGCAAGTGAGAGTAGCACTACATTTTGA 1152 0.4965 MSTHLQDPPSNSNYNPNVPSSTPSPNPFIRGSAAPHAAAAAESYHHHRRAHSENNYRIPDEMMDLSPSNPLNGGGSSTASLEEIGSEDDLFFTYIDVEKLGGCSNGSNRGGNGSDQSGYGNGAGTSGQNDGEKSLNEATTPRTRHRHSCSVDGTTSTSMLGEIMDAKKAMPPDKLAELWTHDPKRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLYQRDTSGLSSENTDLKLRLQAMEQQAHLRDALNDALMKEVERLKIATGEAMNPSESYNLGMHPMQFTESNFFSMPQQHSGPSGHLNIQYPQFSHSPSNMPTHQLQQTNSRQMSEMWQNDHLGSFKGLDISSKGSALVKSEGPSISASESSTTF* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3449 383 Pfam bZIP transcription factor 184 242 IPR004827 GO:0003700|GO:0006355
Psa5g3449 383 CDD bZIP_plant_RF2 185 234 IPR044759 GO:0003700|GO:0006355
Psa5g3449 383 SUPERFAMILY Leucine zipper domain 184 235 IPR046347 GO:0003700|GO:0006355
Psa5g3449 383 PANTHER BZIP TRANSCRIPTION FACTOR 1 380 - -
Psa5g3449 383 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 182 245 IPR004827 GO:0003700|GO:0006355
Psa5g3449 383 Gene3D - 183 236 - -
Psa5g3449 383 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 1 380 - -
Psa5g3449 383 MobiDBLite consensus disorder prediction 1 28 - -
Psa5g3449 383 MobiDBLite consensus disorder prediction 123 154 - -
Psa5g3449 383 SMART brlzneu 180 244 IPR004827 GO:0003700|GO:0006355
Psa5g3449 383 MobiDBLite consensus disorder prediction 1 50 - -
Psa5g3449 383 Coils Coil 200 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3449 Psa-Chr5 268798194 268802190 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3449 5 383 bZIP Transcription Factor Family AT2G40620 48.403 3.01e-94 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Psa5g3449 bZIP_1 2e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3449 - - gmx:100775607 499.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3449 5 268798194 268802190 Psa5g3449 5 268798194 268802190 ECH
Psa5g3449 5 268798194 268802190 Psa2g1186 2 89934985 89938207 PCT