Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3438 ATGAAAAGGGATTTTGAATATATTAATACAGTTCAGGAGGGTAGTGAGGATACACATTCACAGGTCCGCCAAATGCATTTAGTTGGCACCATTAGACAAGCATTTCCCTTTACTCTATGCTATTCTGAAGGAGCACATTGTATGATGTTGACTACAAGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACCAGAGTTTCTAATGAATTCCGGAAGTCAAAGGGTCTCATCTTGGTTACTTCGGATGTATCTGCACGTGGAGTTGATTATCCAGATGTTACTCTTGGTGTACAGGTTGGTCTACCGGCTGATAGAGAACAATATATACATCGACTAGGTAGAACGGGGCGAAGAGGAAAAGAAGGGCAGGGCATACTGCTACTAGCTCCTTGGGAAGAGTTCTTTTTAGCTACTGCAAAAGATTTACCTATTGGGAAAGCTCTGGTCCCTTCAGTTGATCCTGACACTAAGAAAAAGGTGGAAAGGGCTCTATCCAATGTGGAGATGAAAAATAAAGAAGCAGCATATCAGGCATGGCTTGGTTACTACAATCTAACACGAAAGTGGGGAAGATAA 579 0.4162 MKRDFEYINTVQEGSEDTHSQVRQMHLVGTIRQAFPFTLCYSEGAHCMMLTTREIHSRKPQSYRTRVSNEFRKSKGLILVTSDVSARGVDYPDVTLGVQVGLPADREQYIHRLGRTGRRGKEGQGILLLAPWEEFFLATAKDLPIGKALVPSVDPDTKKKVERALSNVEMKNKEAAYQAWLGYYNLTRKWGR* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3438 192 Pfam Helicase conserved C-terminal domain 51 120 IPR001650 -
Psa5g3438 192 PANTHER RNA HELICASE 48 192 - -
Psa5g3438 192 PANTHER RNA HELICASE 1 35 - -
Psa5g3438 192 SMART helicmild6 44 120 IPR001650 -
Psa5g3438 192 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 52 141 IPR027417 -
Psa5g3438 192 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 31 48 192 - -
Psa5g3438 192 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 31 1 35 - -
Psa5g3438 192 CDD SF2_C_DEAD 54 129 - -
Psa5g3438 192 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 21 166 IPR001650 -
Psa5g3438 192 Gene3D - 9 190 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3438 Psa-Chr5 268344470 268345857 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3438 30 148 Eukaryotic Initiation Factors Gene Family AT3G19760 34.074 4.95e-17 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3438 - - cit:102616648 290.041