Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3432 ATGGGTTCTGACATTGGTATCGTGAATGGTTCGTGTGTTCATGAATGGAAGAAAGGGTGGCCTCTACGATCTGGTGGATTTACTCAACTCTGCATCAAGTGCGGATTTGTGGAGGAATGGAAGTGTGACATCATTGAATCATTATCTGCGTATGAGAATTCTGTTTTCTGTAATAAATTCCACCGTCATCAAACTGGTTGGCGAGAGTGTAACTTTTGCAACAAGCCTATCCATTGTGGATGCGTAGTATCTAGATCTTTGTTCGAGTATCTAGACTTCGGTGGTATAGGTTGTGTTAGCTGTGTAAATACTTCCCAACATAGTATGATGAGGAATACTGAAAATCCTAACTGGCCCGTTTCGATGACCCAAAATAACGCAAGGGATATGCATTCTGCTCATTTTGATGGCAGAGTGTTTGTGAGCAATGTTGATGAAGGAAAACTTATGCAATTATGCAGAGTCGTTGAAGCTAGCGAATCCATCCATGTGAACCATGCTCCGAGAGACGGTGTGATAACATGTAACGGAAAAAACAATCAAGAAGTTAAGCCTTCATTCAAGGAAGGAGGGGATACTGGATTTTCGAACGTGATTAAACCGTCTGCTCAGTCGTTAACTTTTGCTACATTTGAAAGTAATAGACCGACATGGGAGATTAAAAATACACATGAAACAAATGTTAAGCCGTCTTTGAATATGTGTTTGGGAAACCCTTCAGGGAGCAACTCTTTCCCACCTTCGGTTGGAGAGAATATAGAAGGAAGACTCGAGGGGAAAGTACCTCCTCCCTTTCATCAAGGACCGAGAACTCGCCCTATATTGCCGAAACTATTGAAGACTAGCCTTACCATGAAAGTAGAAACTGAAAAAGGGGCGGTTAATCAACCGCGTATTGCTCGGCCTCCTGCTGATGGAAGGGGCAAGAATCAGTTACTTCCTAGATATTGGCCAAGGATTACGGATCAGGAGCTGGAGCGTTTGTCTGGAGATTTGAAGTCCACTGTAGTGCCTTTGTTTGAGAAGGTGTTGAGTGCTAGTGATGCAGGTAGAATTGGTCGTCTTGTTCTCCCAAAAGCCTGTGCTGAGGCTTATTTTCCTCATATTTCACATTCTGAAGGCCTTCCTTTACGGGTCCAAGATGTGAAGGGTAATGAATGGACTTTTCAGTTCAGATTTTGGCCTAATAACAACAGCAGGATGTACGTATTGGAGGGTGTCACCCCTTGCATACAGGCCATGGATTTACGTGCTGGTGATACCGTTACATTTAGTCGGATAGATCCTGGGGGAAAACTTGTTATGGGTTTCAGAAAGTCATCAAATTCGCTAGATACACTGGACGTTTCTACCTCTGGACATTCTAATGGCATTTTGGCAAAGGGAACCGCCTTTTCCGGTGGAACTGAGAATCTTCCATTGGGAAGTAATTGTGCCGATCTTCTCCATTCAACAAAAGGGAATGGGGAGCTTCACTTAAATGGGCATCCAAGACCTCCTCATTTGAGTACCGGAGCTACTGGTTTGCTTAAAACTGAAAACGGCGAGATGACAAACAATAATTCACTGGACCAAAAAATTTCAGCTTTAGAAAAGAAGAGGACTCGAAATATTGGTCTTAAAAGTAAAAGATTGCTCATTGGTAATGAAGACGCAATGGAGTTGAGACTTACATGGGAAGAAGCACAGGACTTGCTTCGTCCGCCGCCTCGTGTCAAGCCGAGCATTGTGACAATTGAGGACCAAGTATTTGAAGAATATGATGAACCCCCGGTTTTTGGAAAGAGAACAATATTCAGCGCCTCTTCATCTGGGGCGAAAGAACAATGGGCTCAATGTGATGATTGCTCGAAATGGAGAAAGTTGCCGGTTGATGCTCTTCTTCCTCCCAAGTGGACATGTTCTGAAAATGTTTGGGATACAACCAGATCTTCATGTTCTGCGCTAGAAGAGCTGAGTTCAAGGGAATTAGAAAATCTTTTGAAATCCAGCAAAGATTTTAAGAAGCGACGAATTGTAGAAAACAGCAAGTTGATCCAAGAACACGAGCCTTCTGGCTTAGACGCACTCGCAAGTTTAGCAGTTTTAGGAGAAAATTTCATTGACCCTACTGATTCCTCAGCTGGAGCCACCACTAAACATCCTAGACACCGACCTGGCTGCTCTTGTATTGTGTGCATTCAGCCTCCAAGCGGGAAAGGGAGACACAAGCCAACATGTACTTGCAACGTGTGCACAACCGTCAAGCGTCGGTTCAAAACCCTTATGCTACGCAAGAAGAAACGCCAATCGGATCGCGAAGCAGATGCAGATGCCAAGAAAGACCATATTCGCAAGCCTGATACCGTTGGAGCATCAAGAGATAACGCAAATCCTTTGGAAAAAGAAGGAATAAATAGAGGTCAAGGCGAAGTTGGCGAGTCCAGTGCTGGACAGATAGATCTAAATTGTGATCCCAATCGGGATGACTTGCAAGTGGATAATGTTGCAAAACTTAGTCGTCGACTATGGGAAGGTATGAGTATGAATATGAACCAAAATGGTGGTGTAAGAACCATTAACACTGAAGTGAAGGAAGATCAGCATTCTTCTTTGGTAGTCACTAAATCTAATGGTGAAGATAAGAGATACTTGTCTGATGAAAGATGCATTGCATCCATTGTTAGGAACAAAGAAAAAAGAGATGAGGTATACAGTCATTCAAATGAAAGTCAAAACAATCTGTCTTAA 2730 0.4311 MGSDIGIVNGSCVHEWKKGWPLRSGGFTQLCIKCGFVEEWKCDIIESLSAYENSVFCNKFHRHQTGWRECNFCNKPIHCGCVVSRSLFEYLDFGGIGCVSCVNTSQHSMMRNTENPNWPVSMTQNNARDMHSAHFDGRVFVSNVDEGKLMQLCRVVEASESIHVNHAPRDGVITCNGKNNQEVKPSFKEGGDTGFSNVIKPSAQSLTFATFESNRPTWEIKNTHETNVKPSLNMCLGNPSGSNSFPPSVGENIEGRLEGKVPPPFHQGPRTRPILPKLLKTSLTMKVETEKGAVNQPRIARPPADGRGKNQLLPRYWPRITDQELERLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPHISHSEGLPLRVQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQAMDLRAGDTVTFSRIDPGGKLVMGFRKSSNSLDTLDVSTSGHSNGILAKGTAFSGGTENLPLGSNCADLLHSTKGNGELHLNGHPRPPHLSTGATGLLKTENGEMTNNNSLDQKISALEKKRTRNIGLKSKRLLIGNEDAMELRLTWEEAQDLLRPPPRVKPSIVTIEDQVFEEYDEPPVFGKRTIFSASSSGAKEQWAQCDDCSKWRKLPVDALLPPKWTCSENVWDTTRSSCSALEELSSRELENLLKSSKDFKKRRIVENSKLIQEHEPSGLDALASLAVLGENFIDPTDSSAGATTKHPRHRPGCSCIVCIQPPSGKGRHKPTCTCNVCTTVKRRFKTLMLRKKKRQSDREADADAKKDHIRKPDTVGASRDNANPLEKEGINRGQGEVGESSAGQIDLNCDPNRDDLQVDNVAKLSRRLWEGMSMNMNQNGGVRTINTEVKEDQHSSLVVTKSNGEDKRYLSDERCIASIVRNKEKRDEVYSHSNESQNNLS* 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3432 909 CDD B3_DNA 338 439 IPR003340 GO:0003677
Psa5g3432 909 MobiDBLite consensus disorder prediction 756 819 - -
Psa5g3432 909 Pfam CW-type Zinc Finger 609 651 IPR011124 GO:0008270
Psa5g3432 909 Gene3D - 599 653 - -
Psa5g3432 909 ProSiteProfiles Zinc finger CW-type profile. 604 654 IPR011124 GO:0008270
Psa5g3432 909 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 7 859 - -
Psa5g3432 909 Pfam B3 DNA binding domain 340 439 IPR003340 GO:0003677
Psa5g3432 909 ProSiteProfiles B3 DNA-binding domain profile. 340 441 IPR003340 GO:0003677
Psa5g3432 909 MobiDBLite consensus disorder prediction 760 783 - -
Psa5g3432 909 SUPERFAMILY DNA-binding pseudobarrel domain 338 441 IPR015300 -
Psa5g3432 909 MobiDBLite consensus disorder prediction 890 909 - -
Psa5g3432 909 SMART B3_2 340 440 IPR003340 GO:0003677
Psa5g3432 909 Gene3D - 318 445 IPR015300 -
Psa5g3432 909 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 7 859 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3432 Psa-Chr5 267987009 267993224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3432 1 882 B3 DNA Binding Superfamily AT2G30470 46.240 0.0 682
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa5g3432 B3 1.3e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3432 - - gmx:100789848 1355.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3432 5 267987009 267993224 Psa5g3432 5 267987009 267993224 ECH
Psa5g3432 5 267987009 267993224 Psa2g1183 2 89874917 89878985 PCT