Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3430 ATGGCAAGAGGGAAGGTGAAACTTGCATACATAATCAATAACTCAACCAGGAAGGCAACATTCAAAAAAAGAAAAGATGGTATTATAAATAAGATGAATGAACTAAGCACCCTTTGTGGAATAGATGCTTGTGCCATCATCTATGGAGAAAACTATCCTCAAGCAGAGGTTTGGCCATCTAGGGTTGGAGTAAGAAATGTATTGTCCAGATTCATGAGTTTGCCTGAACTCGAACGAAGCAAAAAGATGGTGGATCTAGAGAGCTTCTTGGCGCAAAGCATTATGAAAGCTAAAGGCATGTTGAGGAAACAAGTAGAGGAAAACCAAAAGAAGGAAATGGCTTATGTTATAAGTCAGTTTATTCATACTGGTGGATATAACATGGCAAATGTGAGCTCGAACGATGTAACTAGCCTTTCAGCATTTATTGATACAAATCTGAAAGAAGTTGAGCAAAGATTGAATTCAATGGATGTCCAAGACCAAGAGGAGGTTGCAAATGGTGCTAGAGTTGTTAATGAAGGAGATATGCTGGCTAATATGGATCATGCTAATATTCTAGGTTTGGAGACCAACATCAATTATGGTATGCAGAATGATGATCAATTTTCTATTAACTTCTCTGAGATACCATTTCATGATGTTAATGTCAACCCAAATAGATTTTAA 669 0.3707 MARGKVKLAYIINNSTRKATFKKRKDGIINKMNELSTLCGIDACAIIYGENYPQAEVWPSRVGVRNVLSRFMSLPELERSKKMVDLESFLAQSIMKAKGMLRKQVEENQKKEMAYVISQFIHTGGYNMANVSSNDVTSLSAFIDTNLKEVEQRLNSMDVQDQEEVANGARVVNEGDMLANMDHANILGLETNINYGMQNDDQFSINFSEIPFHDVNVNPNRF* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3430 222 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa5g3430 222 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa5g3430 222 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Psa5g3430 222 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Psa5g3430 222 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa5g3430 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Psa5g3430 222 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 4 163 - -
Psa5g3430 222 PANTHER MADS BOX PROTEIN 4 163 - -
Psa5g3430 222 SUPERFAMILY SRF-like 1 85 IPR036879 GO:0003677|GO:0046983
Psa5g3430 222 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3430 Psa-Chr5 267785209 267786719 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3430 1 154 Type I MADS-box Gene Family AT5G48670 50.000 4.70e-37 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Psa5g3430 SRF-TF 1.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3430 - - cam:101511888 248.825