Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3424 ATGGAAAACATGAAGGCTAGGAAAGTTCACTCTAAATTTGTGTCCATGAAGTTCTATTCTGCTTCAATGGCTTCTTTCCTTTTTGTCATAGCTATTTTTTTCTCTCATGTTAATGCGGATCTTAATTCCGACAAGCAAGCCCTTCTTGATTTTATCAATGCTGTGCCGCATCGTAGGAACCTGATGTGGAATCCATCCACCTCAATCTGTACATCTTGGGTTGGCATCACTTGCAATCAAGATAAAACTCGAGTTGTCAATGTCCGGCTCCCTGGAGTCGGACTAGTCGGCTCGATCCCGTCAAATACACTTGGAAAGCTTGATGCCGTGAAAATTATCAGTCTTCGTTCCAACCTTCTCGGTGGAAACCTGCCTGCTGACATTGCTTCGCTCCCGTCTCTTCAGTATCTCTACCTCCAGCATAATAACTTTTCCGGTGATATTCCCACCTCGTTGTCACACCAACTAGTTGTTCTTGATTTGTCTTATAATTCTTTCGCCGGAAGAATTCCAAAGACATTACAAAATTTGACAGAATTGAGCAGTTTGAATCTCCAAAACAACTCAATATCCGGGAGCATACCGAATCTCAGTGTTACTAAGCTTCGTAATTTGAATTTAAGCTACAACAATTTGAGTGGACCTATCCCTTCAACCCTCCGAATTTATCCTAATTCATCTTTTGAAGGAAACAAAGGTTTATGCGGATTGCCTCTAAAGCCATGCTCTACGGTTCCACCTCCTCCTGCCTTGACTCCTACTCCATCATCCGCTCCGGGAAAAGGCAGCTCCAAATTGAGTAAGGTAGCTATCATCGCGATTGCGGTTGGTGGAGCCATGCTGCTATTTTTCGTAGTTCTTGTTATTGTTCTTTGTTGTTTGAAGAAAGACGGTGATGATGATGGAGGCTCTAGAGAAGTTAAAGCGAAGGGTCCTAGTGGTGGCGGTGGTGGTGGTAGGGGTGAGAAGCCGAAAGAAGAGTTTGGTAGTGGAGTGCAAGAACCTGAGAAGAACAAGTTGGTTTTCTTTGAGGGAAGTTCTTATAATTTCGATCTCGAAGACTTGCTAAGAGCTTCAGCAGAAGTTCTTGGAAAAGGTAGCTATGGTACCTCATATAAGGCTATATTGGAGGAGTCAATGACAGTAGTGGTGAAAAGGTTGAAAGAAGTTGTGGTTGGCAAAAAGGAATTTGAACAACAGATGGAAATTATGGGAAGAGTTGGACAACACCCGAACGCTGTGCCGCTTCGCGCTTATTACTATTCAAAAGATGAAAAGCTTTTGGTTTATGACCATGTCCCTGCTGGCAACCTATCCACACTCTTGCATGGCAGTCGAGGAGGTGGAAGAAGTCCATTGGATTGGGATTCGAGAGTAAAAATATCCCTTGGAACTGCGAGAGGAATCGCCCACATTCATTCTGTCGGCGGTCCAAAATTCACACATGGAAATATCAAATCCTCAAATGTCCTCCTCAACCAAGATAACGACGGCTGCATTTCTGATTTCGGCCTAACATCACTTATGAATGTTCCTGCAAACCCTTCTAGAGCTGCAGGTTACCGCGCTCCCGAGGTGATTGAAACCCGAAAGCACTCTCATAAATCAGATGTCTACAGCTTTGGTGTCCTCCTTCTAGAGATGCTTACCGGGAAAGCGCCTCTTCAATCTCCAGGACGCGACGATATGGTCGATCTCCCTAGATGGGTCCAATCCGTCGTCCGGGAGGAGTGGACAGCCGAGGTCTTCGACGTTGAGCTAATGAGGTACCAAAACATCGAAGAAGAAATGGTGCAAATGTTGCAAATTGCCATGGCATGTGTGGCGAAAATGCCTGATATGAGACCAAACATGGACGAAGTGGTGAGAATGATCGAAGAAATCCGGCAATCTGACTCAGAGAACCGACCATCTTCCGAAGAGAATAAATCTAAGGACTCAAATGTTCAAACTCCATAG 1959 0.4467 MENMKARKVHSKFVSMKFYSASMASFLFVIAIFFSHVNADLNSDKQALLDFINAVPHRRNLMWNPSTSICTSWVGITCNQDKTRVVNVRLPGVGLVGSIPSNTLGKLDAVKIISLRSNLLGGNLPADIASLPSLQYLYLQHNNFSGDIPTSLSHQLVVLDLSYNSFAGRIPKTLQNLTELSSLNLQNNSISGSIPNLSVTKLRNLNLSYNNLSGPIPSTLRIYPNSSFEGNKGLCGLPLKPCSTVPPPPALTPTPSSAPGKGSSKLSKVAIIAIAVGGAMLLFFVVLVIVLCCLKKDGDDDGGSREVKAKGPSGGGGGGRGEKPKEEFGSGVQEPEKNKLVFFEGSSYNFDLEDLLRASAEVLGKGSYGTSYKAILEESMTVVVKRLKEVVVGKKEFEQQMEIMGRVGQHPNAVPLRAYYYSKDEKLLVYDHVPAGNLSTLLHGSRGGGRSPLDWDSRVKISLGTARGIAHIHSVGGPKFTHGNIKSSNVLLNQDNDGCISDFGLTSLMNVPANPSRAAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPGRDDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMACVAKMPDMRPNMDEVVRMIEEIRQSDSENRPSSEENKSKDSNVQTP* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3424 652 MobiDBLite consensus disorder prediction 627 643 - -
Psa5g3424 652 Pfam Leucine Rich Repeat 156 177 IPR001611 GO:0005515
Psa5g3424 652 Pfam Leucine Rich Repeat 201 220 IPR001611 GO:0005515
Psa5g3424 652 CDD STKc_IRAK 363 628 - -
Psa5g3424 652 Gene3D Ribonuclease Inhibitor 42 154 IPR032675 -
Psa5g3424 652 MobiDBLite consensus disorder prediction 627 652 - -
Psa5g3424 652 Pfam Protein kinase domain 360 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g3424 652 PANTHER OS05G0588300 PROTEIN 11 652 - -
Psa5g3424 652 PANTHER LRR RECEPTOR-LIKE KINASE 11 652 - -
Psa5g3424 652 Pfam Leucine rich repeat N-terminal domain 42 79 IPR013210 -
Psa5g3424 652 Gene3D Transferase(Phosphotransferase) domain 1 433 651 - -
Psa5g3424 652 Gene3D Ribonuclease Inhibitor 155 243 IPR032675 -
Psa5g3424 652 SUPERFAMILY L domain-like 42 242 - -
Psa5g3424 652 Gene3D Phosphorylase Kinase; domain 1 325 432 - -
Psa5g3424 652 ProSiteProfiles Leucine-rich repeat profile. 179 201 IPR001611 GO:0005515
Psa5g3424 652 SUPERFAMILY Protein kinase-like (PK-like) 361 635 IPR011009 -
Psa5g3424 652 MobiDBLite consensus disorder prediction 302 332 - -
Psa5g3424 652 ProSiteProfiles Protein kinase domain profile. 357 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3424 Psa-Chr5 267485405 267489255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3424 15 650 Receptor kinase-like Gene Family AT5G58300 66.977 0.0 862
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Psa5g3424 Pkinase 1e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3424 - - gmx:100796171 1014.99