Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3419 ATGTCGTATGTTCCTCCACACTTGAGAAACGCGAGCTCAACCGCGGTGGCTACAACCACCAGACCTTCAGCATCATCCGGAACCCTAGACCACCACCACCACAACACCAACCTCGCATTCTCTTCCTCGTACCCTCACTCCAACTCTTCTTCTCTAGCCAATGGTTCTCGTCGTACCTCTGCCGCACCTCCGCCATCTCGGATTGTCACCGTCCCTGACACTGTCTTCCCTAACTGGCAACCTTCTGAACGCGTTTCCCGCATGAACCCCGACCAGATTGAAGAGGTCCGCCTACGGCTTAATCTTGACGTTACTGTTTCATCTGACTCTACTGCCGCACCTGGACCTATAGAATCGTTTAATGATATGTGTTTGCATCCAAGTATCATGAAGGATATTGCTTATCATGAATACACCAGGCCAACGTCTATCCAGGCACAGGCCATGCCAATTGCTCTCAGTGGAAGGGATCTTTTGGGTTGTGCAGAAACTGGTAGTGGGAAGACTGCAGCTTTCACCATTCCTATGTTACAGCATTGCTTGGTCCAACCTCCAATTCGACGTGGAGATGGTCCCCTGGCATTAGTTTTGGCTCCTACTAGAGAACTTGCTCAACAAATAGAAAAGGAGGTCCAAGCATTTAGCAGATCCCTCGAGTCATTAAAAACTGCCATAGTTGTTGGTGGAACTAACATTGAAAAGCAGAGGTCTGAACTAAGAGCAGGAGTTGAAATAGCAGTCGCCACCCCTGGAAGATTCATTGACCACTTACAACAAGGCAACACTTCTCTCTCTAGAATTTCTTATGTTGTTCTAGACGAGGCAGATAGAATGCTTGATATGGGGTTTGAACCACAAATAAGGGAGATCATGAGAAGTCTACCTGAGAAGCATCAAACACTGCTGTTTAGTGCAACGATGCCTGTGGAGATCGAAGCATTAGCAAAGGAGTACTTAGCTAACCCAGTTCAAGTTAAGGTGGGAAAAGTGAGCAGCCCAACAACTAATGTTTCACAAACTCTTGTAAAGGTGTCTGAAAGTGAGAAGATTGACCGACTCCTAGATTTGCTTGTAGAAGAGGCATCACAAGCTGAAAAGTGTGGTCATCCATTTCCATTGACTATTGTGTTTGTTGAGAGAAAGACAAGGTGCGATGAAGTGGCTGAAGCATTGGTTGCTCAAGGATTATCTGCAGTTTCTCTGCATGGTGGTCGCAGTCAGAATGAAAGAGAGGCTGCATTACAAAATTTTCGGAGCAGCTCCACCAGCATTTTGGTTGCCACTGATGTTGCATCACGGGGCTTGGATGTCACAGGAGTGTCACACGTCATCAATCTTGACCTTCCAAAGACCACAGAAGATTATATACACCGGATTGGAAGGACAGGGCGTGCAGGATCAACTGGCATAGCCACTTCGTTTTACACTGATCGTGACATGTTCCTTGTGACAAATATAAGGAAAGCAATAGCTGATGCTGAATCTGGGAATGCTGTGGCATTTGCTACTGGAAAGGTTGCCAGAAGGAAGGAGAAAGAAGCAGCAGCTGCACACAAGGAAGCAAATATTGCTTCATCTAGACACCTTGGATTAGGAGCTGCATCAATTAACATCGAAGATAAGTACAGATTCATGATTGCTGCCTCAAACAGTAGAGGAGAAGGCGCAGCAGATAGTGCATGGGATGATTGA 1692 0.4645 MSYVPPHLRNASSTAVATTTRPSASSGTLDHHHHNTNLAFSSSYPHSNSSSLANGSRRTSAAPPPSRIVTVPDTVFPNWQPSERVSRMNPDQIEEVRLRLNLDVTVSSDSTAAPGPIESFNDMCLHPSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMLQHCLVQPPIRRGDGPLALVLAPTRELAQQIEKEVQAFSRSLESLKTAIVVGGTNIEKQRSELRAGVEIAVATPGRFIDHLQQGNTSLSRISYVVLDEADRMLDMGFEPQIREIMRSLPEKHQTLLFSATMPVEIEALAKEYLANPVQVKVGKVSSPTTNVSQTLVKVSESEKIDRLLDLLVEEASQAEKCGHPFPLTIVFVERKTRCDEVAEALVAQGLSAVSLHGGRSQNEREAALQNFRSSSTSILVATDVASRGLDVTGVSHVINLDLPKTTEDYIHRIGRTGRAGSTGIATSFYTDRDMFLVTNIRKAIADAESGNAVAFATGKVARRKEKEAAAAHKEANIASSRHLGLGAASINIEDKYRFMIAASNSRGEGAADSAWDD* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3419 563 MobiDBLite consensus disorder prediction 1 30 - -
Psa5g3419 563 MobiDBLite consensus disorder prediction 49 63 - -
Psa5g3419 563 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 149 325 IPR014001 -
Psa5g3419 563 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 118 146 IPR014014 GO:0003724
Psa5g3419 563 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 271 279 IPR000629 -
Psa5g3419 563 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 349 507 IPR001650 -
Psa5g3419 563 Gene3D - 331 524 IPR027417 -
Psa5g3419 563 Coils Coil 204 224 - -
Psa5g3419 563 Gene3D - 78 329 IPR027417 -
Psa5g3419 563 Pfam DEAD/DEAH box helicase 142 312 IPR011545 GO:0003676|GO:0005524
Psa5g3419 563 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 486 IPR027417 -
Psa5g3419 563 MobiDBLite consensus disorder prediction 49 69 - -
Psa5g3419 563 SMART ultradead3 137 340 IPR014001 -
Psa5g3419 563 PANTHER ATP-DEPENDENT RNA HELICASE DBP2-LIKE 25 528 - -
Psa5g3419 563 CDD DEADc 129 326 - -
Psa5g3419 563 Pfam Helicase conserved C-terminal domain 349 466 IPR001650 -
Psa5g3419 563 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 25 528 - -
Psa5g3419 563 SMART helicmild6 385 466 IPR001650 -
Psa5g3419 563 CDD SF2_C_DEAD 337 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3419 Psa-Chr5 267230312 267239596 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3419 118 488 Eukaryotic Initiation Factors Gene Family AT1G72730 36.267 1.46e-71 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3419 K12823 - gmx:100818387 920.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3419 5 267230312 267239596 Psa5g3419 5 267230312 267239596 ECH