Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3413 ATGACCGTACAATCAACCTTGAAGCTTCACAATCTGAAGCCAAAAGCTTCAAGATCAAATTTTGAAACTAACCCATCATTCAAAACCACCACCAAAACCCAAAACAAGATGAAGCTACTCCGGGTCATTCTCACTGACCATGATGCAACTGATTCCGACTCTTCCGGTGATGATGAACCGTCACCGCGAAAGGTTCAAAGAGGGAAGAGGGAAATAACCGAAATCACCATGCACTTTCCTCTTGTATCTGATTCTCCAAGAACCTCACCTTCTTCTTCAGCTTGCTCCACTGACCCGACCCGTTTCAAAAGACCTGGAAAAGTAGTCAAAAAGTCCGGTAGTTCTCGCCGGCAAAACATGTTCCGTGGTGTTCGTCAGAGACCTTGGGGTCGGTGGACAGCTGAGATCCGTGACCCGAACCAACGGAAACGCGTCTGGTTAGGAACTTTTGACACGGCGGAGGAAGCCGCCGCTGTGTACGATGAAGCCGCCGTGAAGCTCAAGGGCCCAAAGGCGGTTACCAACTTTCCAAACAGCGACGCCGTTAAGAAAGATGTCAACCAGCCACCGAAGATTTTCTCCGGCGACGGTTTCGCTTCTCCGACTTCCGTTCTGCCTTACTACGACGGTGATTCGACGCCGTTTGACAGCTTTCGTTACGGAACTGTGGATGCGTTTGGGTTCGATATCGACACGCCGTTAAGTTTAACGGACGTTAACTTTATGGGGTTTCGGAAAGAAAAAGAAGAGTTCGGTGAGTTTGACTTTGACGAGTTTCTGACGTGGCCCAGTTAA 795 0.4918 MTVQSTLKLHNLKPKASRSNFETNPSFKTTTKTQNKMKLLRVILTDHDATDSDSSGDDEPSPRKVQRGKREITEITMHFPLVSDSPRTSPSSSACSTDPTRFKRPGKVVKKSGSSRRQNMFRGVRQRPWGRWTAEIRDPNQRKRVWLGTFDTAEEAAAVYDEAAVKLKGPKAVTNFPNSDAVKKDVNQPPKIFSGDGFASPTSVLPYYDGDSTPFDSFRYGTVDAFGFDIDTPLSLTDVNFMGFRKEKEEFGEFDFDEFLTWPS* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3413 264 PIRSF PTI6 7 264 IPR017392 GO:0003700
Psa5g3413 264 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI6-LIKE 31 260 - -
Psa5g3413 264 SUPERFAMILY DNA-binding domain 120 178 IPR016177 GO:0003677
Psa5g3413 264 MobiDBLite consensus disorder prediction 83 99 - -
Psa5g3413 264 CDD AP2 121 179 IPR001471 GO:0003700|GO:0006355
Psa5g3413 264 Gene3D AP2/ERF domain 120 178 IPR036955 GO:0003700|GO:0006355
Psa5g3413 264 MobiDBLite consensus disorder prediction 1 38 - -
Psa5g3413 264 ProSiteProfiles AP2/ERF domain profile. 120 177 IPR001471 GO:0003700|GO:0006355
Psa5g3413 264 SMART rav1_2 120 183 IPR001471 GO:0003700|GO:0006355
Psa5g3413 264 MobiDBLite consensus disorder prediction 83 117 - -
Psa5g3413 264 MobiDBLite consensus disorder prediction 41 71 - -
Psa5g3413 264 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 31 260 - -
Psa5g3413 264 PRINTS Ethylene responsive element binding protein signature 121 132 IPR001471 GO:0003700|GO:0006355
Psa5g3413 264 PRINTS Ethylene responsive element binding protein signature 143 159 IPR001471 GO:0003700|GO:0006355
Psa5g3413 264 MobiDBLite consensus disorder prediction 1 71 - -
Psa5g3413 264 Pfam AP2 domain 121 169 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3413 Psa-Chr5 267063715 267065460 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3413 26 207 AP2-EREBP Transcription Factor Family AT4G27950 44.279 2.04e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa5g3413 AP2 6.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3413 K13434 - gmx:100794593 293.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3413 5 267063715 267065460 Psa5g3413 5 267063715 267065460 ECH
Psa5g3413 5 267063715 267065460 Psa2g1174 2 89239756 89241667 PCT