Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3411 ATGTCAAAATTGGTCAAACTGAGCCTTAGGAATTGCAACTTGCAAGGACCAATTCCTGATTTAAGCTTGATACCGCACCTTCTTTATATTGACCTTAGCTCCAATCAGTTGAATGAATCAATTCCTCCTAATAAGCTTGCTGAAAATATCACAACTGTTATTTTATCAGACAACAATCTTACTGGACCTATTCCATCCTATTTTTCGGATCTTCCACGACTCCAGAAATTGTCCCTTGCAAACAATTTATTGAGTGGAAGTGTTCCATCCAGCATTTGGCAGAACAAGATTTCAAATGCTAATAAAAGATTGCTACTAGAGTTGCAAAATAATCAATTTGTAAACATATCAGGCACTACTAATCTTCCTCCAAATGTCACACTCTTGCTTGATGGGAATCCCCTGTGCTCAGATAACACATTCAATCAGTTCTGTAAACTTGAAGGAGCTAGTAGTGAAACAAATGGCACATCTCCAAAAAACTCCAGTGACCCTTGTCCAAATCAAAGATGTCCACCTCCTTATGAATTCTATGTGAATTGTTTCTGTGTGGCTCCATTGATTATTGGTTATCGATTGAGAAGTCCTGGTTTTTCATATTTTCCTCCATATTTCAATGCATTTGAAGAATATTTGACTTCTAATCTTAAGCTACATGCCAATCAACTGAGCTATACTTTTGAGTGGCAAGTAGGACCACGGGTGCTAATGATCTTGAAGTTTTTTCCTGAATATGTTGATAACAATAGCTCTCGCACTTTCAATTCAAGTGAAATCCAACGGATCAGAAACATGTTCACTGGATGGGTCATTCCTAATCGTGATTTGTTCGGGCCTTATGACCTGATGGACCTGGTTCCTTATAATAACGGGACTGAGACCTCGTCCAATTCAGGCCTAAGCACAGGTGCTTTGGTTGGTATAATCTTAGGCTCAATTGCGTGTGTAATTTCGTTGTCTGCAATTTTTATTCTTATAATGTTAAGAATAAGATTAAGACGTCATGATGCAGTTTCCAAACCACATCATTCATCTAAGATCTCAATACAAGTTGATGGCACAAGAGCTTTTACTTATGTGGAATTGTCTGCTGCTACAAACAATTTTGACAACAATGCTCAAATTGGACAAGGAGGCTATGGGAAGGTTTATAAAGGTATTCTTTCCAATGGCACTGTGGTTGCCATAAAACGTGCACAGCAGGGATCACTGCAAGGCGAGAAGGAATTTCTCACAGAAATAAGAATACTGTCAAGGATACATCATCGCAACCTTGTGTCTCTGATTGGATACTGTGATGAAGAAGGGGAACAGATGCTGGTTTATGAATTTATGTCCAATGGCACTCTAAGGGACCACCTTTCTGTTACATCAGAAAAACCTTTGAATTTTGCTATGAGATTGAAGATAGCACTCGAGTCAGCTAAAGGTCTCATGTATCTACACACAGACGCTGATCCTCCAATATTTCACCGTGATGTTAAGTCAAGCAACATATTATTAGACTCTAAGTTCACTGCAAAAGTTGCAGACTTTGGACTTTCACGGCTAGCCCCAGTTTCAGATGTCCAAGGCATTGTACCTGGTCATGTATCCACGGTGGTAAAGGGAACGCCGGGTTACCTTGATCCAGAGTACTTCTTAACTCACACATTGACCGACAAGAGCGATGTTTACAGTCTTGGTGTCGTGTTTCTAGAACTTTTGACTGGGATGCACCCAATCGCACATGGGAAAAATATTGTCAGAGAGGTTAATCTTGCTTTCGAATCGGGTGAGATATCTTCAGTTATTGATAAAAACATGGGGTCTTATCCATTTGAACATGCAGAAAAGTTTTTAAATTTGGCTCTGAAGTGTTCTGAAGATGAGCCAGAGCCACGTCCTAAAATGGCAGAAGTGGTTAGAATACTTGAAAACATGTGTTCTGTGATGACAGATTCAGATACAACTAGAGATACATCTACAACCAGTGATTCTCGCAAAACAGTTAGCTTTCTTGGCACACCTTCTTCATCCTCAACCATAAATACTCCCTTCGTATTAAGAACTGTATAA 2058 0.3941 MSKLVKLSLRNCNLQGPIPDLSLIPHLLYIDLSSNQLNESIPPNKLAENITTVILSDNNLTGPIPSYFSDLPRLQKLSLANNLLSGSVPSSIWQNKISNANKRLLLELQNNQFVNISGTTNLPPNVTLLLDGNPLCSDNTFNQFCKLEGASSETNGTSPKNSSDPCPNQRCPPPYEFYVNCFCVAPLIIGYRLRSPGFSYFPPYFNAFEEYLTSNLKLHANQLSYTFEWQVGPRVLMILKFFPEYVDNNSSRTFNSSEIQRIRNMFTGWVIPNRDLFGPYDLMDLVPYNNGTETSSNSGLSTGALVGIILGSIACVISLSAIFILIMLRIRLRRHDAVSKPHHSSKISIQVDGTRAFTYVELSAATNNFDNNAQIGQGGYGKVYKGILSNGTVVAIKRAQQGSLQGEKEFLTEIRILSRIHHRNLVSLIGYCDEEGEQMLVYEFMSNGTLRDHLSVTSEKPLNFAMRLKIALESAKGLMYLHTDADPPIFHRDVKSSNILLDSKFTAKVADFGLSRLAPVSDVQGIVPGHVSTVVKGTPGYLDPEYFLTHTLTDKSDVYSLGVVFLELLTGMHPIAHGKNIVREVNLAFESGEISSVIDKNMGSYPFEHAEKFLNLALKCSEDEPEPRPKMAEVVRILENMCSVMTDSDTTRDTSTTSDSRKTVSFLGTPSSSSTINTPFVLRTV* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3411 685 MobiDBLite consensus disorder prediction 646 666 - -
Psa5g3411 685 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 1 664 - -
Psa5g3411 685 SUPERFAMILY Protein kinase-like (PK-like) 342 639 IPR011009 -
Psa5g3411 685 Gene3D Phosphorylase Kinase; domain 1 339 444 - -
Psa5g3411 685 ProSitePatterns Serine/Threonine protein kinases active-site signature. 489 501 IPR008271 GO:0004672|GO:0006468
Psa5g3411 685 SUPERFAMILY L domain-like 2 147 - -
Psa5g3411 685 CDD STKc_IRAK 375 641 - -
Psa5g3411 685 Gene3D Ribonuclease Inhibitor 1 231 IPR032675 -
Psa5g3411 685 Pfam Leucine rich repeat 49 94 IPR001611 GO:0005515
Psa5g3411 685 Pfam Protein kinase domain 371 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g3411 685 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 664 - -
Psa5g3411 685 SMART serkin_6 369 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g3411 685 ProSitePatterns Protein kinases ATP-binding region signature. 375 397 IPR017441 GO:0005524
Psa5g3411 685 Gene3D Transferase(Phosphotransferase) domain 1 445 664 - -
Psa5g3411 685 ProSiteProfiles Protein kinase domain profile. 369 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3411 Psa-Chr5 266812506 266820393 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3411 1 650 Receptor kinase-like Gene Family AT5G01950 53.544 0.0 670
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Psa5g3411 Pkinase 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3411 - - gmx:100786467 959.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3411 5 266812506 266820393 Psa5g3411 5 266812506 266820393 ECH