Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3410 ATGCCAATATTTTCTACCTGTTTTTTGTCCTCTGGGGTTACATGCAGTGATTTATCAAACAACGTACTTACGGGAACCATTCCGTCCTCATTTTCTAATCTTCCAAATCTTCAGAAATTGTCTCTTGCAAACAATTCATTGATTGGCAGTGTTCCTTCTACAATTTGGCAGAACAAGACTTTAAATGGAACAGAAAGATTTATATTGGAGTTGGAAAATAATCAATTCACAACTGTATCAGGCAGTATAGATCTTCCTCCAAATGTCACAGTCTTGCTCCGTGGGAATCCTCTATGCTCAAATAACAGCCTGGGTCAGCTCTGTAGCTCTGAAGGTGTTAACAACGGAGATGGCCTAATTCCATCAAACGCCAATGGATTCTGTCCTGCTCAATCGTGCCCACCACCTTACGAGTACTCTTTGGATTGTTTCTGTGCCGCCCCATTGCTTGTTGATTACCGACTGAAAAGTCCCGGGTTTTCAGATTTCCGTCCATTTATTAATGAATTTGAGAAGTACCTGACTACTGGTCTTACTATAAATATGAGTCAGTTAAACTTTACTTTTCGGTGGGAGGCAGGACCTCGACTGAGAATGAACTTGAAGTTTTTTCCTGTATATCTTGGTCAAAATAGTTCTCATACTTTCAATGAAACCGAGGTCGCACGAATTAAAAGCATGTTCACAGGATGGAATATTCCTGACAGTGATTTGTTTGGGCCCTATGAATTGATCAACTTCAATATGGGTATTTACCAGAATGTTACAGTCACCTCTTCAAAATCAGGGATAAGTACAGGAGCAATAGTCGGCATAGTCTTGGGAGCAATTGCATGTGCGGTGACGTTGTCTGCGATTGTTACTCTTCTTATATTAAGAACAAAATTGAAAGATTATCGTGCAGTTTCCAAACGGCGTCATGTGTCTAAAATCTCGATAAAAATTGATGGTGTAAGGGCCTTCACCTACGGAGAATTATCCTCCGCTACAAACAATTTTAGCAGCTCTGCTCAAGTAGGACAAGGGGGATACGGAAAGGTATATAAAGGTATTATATCCGATGGCACTGTTGTTGCCATTAAACGTGCACAGGAGGGGTCATTGCAAGGCGAGAAGGAGTTCCTTACAGAAATATCGTTACTATCAAGGTTACATCATCGCAACCTTGTCTCTTTGGTTGGATATTGTGACGAAGAAGGTGAACAGATGCTGGTTTATGAATATATGCCAAATGGCACACTAAGGGATCACCTTTCTGTTTCATCAAAAGAACCTCTGACTTTTATCACGAGATTGAAAATCGCACTAGGGTCAGCTAAAGGTCTCATGTATCTACACAATGAAGCTGATCCTCCAATATTTCATCGGGATGTCAAGGCCAGCAACATATTATTGGACTCTAAGCTATCCGCAAAAGTGGCAGATTTTGGACTTTCACGGCTTGCCCCAGTTCCAGATATGGAAGGCATTGTGCCTGGTCATGTATCTACAGTGGTAAAAGGGACACCGGGTTACCTTGATCCGGAGTACTTCTTAACTCACAAGTTGACCGACAAGAGTGATGTTTACAGTCTCGGTGTTGTGTTTCTTGAACTTTTGACCGGAATGCATCCTATCTCACATGGCAAAAATATTGTTAGAGAGGTCAATCTTTCGTACCAAGCCGGCGTAATATTTTCAATCATCGACGAGCGAATGGGGTCGTACCCATCCGAGCACGTAGAGAAATTTTTGACATTGGCCCTCAAGTGTTGCAATGACGAGCCAGATAATCGACCAAAAATGGCAGAAGTAGTTAGAGAGCTTGAAAACATATGGAATGTAATGCCGGAATCAGATACAAGAAGAGGTGAATCTGTAACCAGTGTGAGTGATTCAAGCAAAGCAATGAGTACACCATCTTCATCATCTGCTGCTATAAGGACTTCTTTTGTATCAGGTGATGTGTCTGGTAGTGACCTTGTTAGTGGAGTAATACCAAGCATTAAGCCAAGATAG 1998 0.4159 MPIFSTCFLSSGVTCSDLSNNVLTGTIPSSFSNLPNLQKLSLANNSLIGSVPSTIWQNKTLNGTERFILELENNQFTTVSGSIDLPPNVTVLLRGNPLCSNNSLGQLCSSEGVNNGDGLIPSNANGFCPAQSCPPPYEYSLDCFCAAPLLVDYRLKSPGFSDFRPFINEFEKYLTTGLTINMSQLNFTFRWEAGPRLRMNLKFFPVYLGQNSSHTFNETEVARIKSMFTGWNIPDSDLFGPYELINFNMGIYQNVTVTSSKSGISTGAIVGIVLGAIACAVTLSAIVTLLILRTKLKDYRAVSKRRHVSKISIKIDGVRAFTYGELSSATNNFSSSAQVGQGGYGKVYKGIISDGTVVAIKRAQEGSLQGEKEFLTEISLLSRLHHRNLVSLVGYCDEEGEQMLVYEYMPNGTLRDHLSVSSKEPLTFITRLKIALGSAKGLMYLHNEADPPIFHRDVKASNILLDSKLSAKVADFGLSRLAPVPDMEGIVPGHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMHPISHGKNIVREVNLSYQAGVIFSIIDERMGSYPSEHVEKFLTLALKCCNDEPDNRPKMAEVVRELENIWNVMPESDTRRGESVTSVSDSSKAMSTPSSSSAAIRTSFVSGDVSGSDLVSGVIPSIKPR* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3410 665 MobiDBLite consensus disorder prediction 614 639 - -
Psa5g3410 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672|GO:0006468
Psa5g3410 665 SUPERFAMILY Protein kinase-like (PK-like) 318 621 IPR011009 -
Psa5g3410 665 CDD STKc_IRAK 339 605 - -
Psa5g3410 665 Gene3D Phosphorylase Kinase; domain 1 303 408 - -
Psa5g3410 665 ProSiteProfiles Protein kinase domain profile. 333 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g3410 665 SMART serkin_6 333 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g3410 665 SUPERFAMILY L domain-like 17 98 - -
Psa5g3410 665 Pfam Protein kinase domain 335 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g3410 665 MobiDBLite consensus disorder prediction 611 639 - -
Psa5g3410 665 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 9 634 - -
Psa5g3410 665 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 9 634 - -
Psa5g3410 665 Gene3D Transferase(Phosphotransferase) domain 1 409 629 - -
Psa5g3410 665 ProSitePatterns Protein kinases ATP-binding region signature. 339 361 IPR017441 GO:0005524
Psa5g3410 665 Gene3D Ribonuclease Inhibitor 4 121 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3410 Psa-Chr5 266656944 266661052 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3410 2 615 Receptor kinase-like Gene Family AT5G01950 56.688 0.0 651
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Psa5g3410 Pkinase 2.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3410 - - gmx:100786467 999.193