Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3407 TTTTCTAACCACAACAAGTTCATCAACTATGGGAAGAAGACCGGCGAGATGTTACCGTCAGATAAAAGAACAAACCGTATCCAAAAATCGCGCTTCTGCCGCGGAGTTCCCGATCCAAAGATCCGAATCTACGACGTAGGGATGAAGAAAAAGGGCGTAGACGAGTTTCCTTTCTGCGTTGCAGGACTCGGATTGAGAGGCGCGTTTGGGAAGCCGTTGGGGACGTGTGCTAGGGTGAGTATTGGACAGGTGCTGTTGTCTGTTAGGTGTAAGAGTGGGAATGGTCAGCATGCTCAAGAGGCTCTTCGTCGGGCTAAGTTTAAGTTCCCCGGTCGTCAGAAAATTATTGTTAGTAGAAAGTGGGGTTTTACTAAATTGGGTCAAGAGGAGTACTTGAAGTTGAAATCTGAGAACAGAATTGTGCCAGATGGTGTAAATGCTAAGGTTCTTGGGTGCCATGGACCATTGGCCAATCGTCAGCCAGGAAGAGCTTTCTTGCCAATCTCTGCTTAG 513 0.4756 FSNHNKFINYGKKTGEMLPSDKRTNRIQKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVAGLGLRGAFGKPLGTCARVSIGQVLLSVRCKSGNGQHAQEALRRAKFKFPGRQKIIVSRKWGFTKLGQEEYLKLKSENRIVPDGVNAKVLGCHGPLANRQPGRAFLPISA* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3407 170 Gene3D Ribosomal protein L10e/L16 63 129 IPR036920 GO:0003735|GO:0005840|GO:0006412
Psa5g3407 170 PANTHER 60S RIBOSOMAL PROTEIN L10 64 167 IPR001197 GO:0003735|GO:0005840|GO:0006412
Psa5g3407 170 PANTHER 60S RIBOSOMAL PROTEIN L10 27 61 IPR001197 GO:0003735|GO:0005840|GO:0006412
Psa5g3407 170 SUPERFAMILY Ribosomal protein L16p/L10e 28 123 IPR036920 GO:0003735|GO:0005840|GO:0006412
Psa5g3407 170 Gene3D Ribosomal protein L10e/L16 17 62 IPR036920 GO:0003735|GO:0005840|GO:0006412
Psa5g3407 170 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 27 61 - -
Psa5g3407 170 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 64 167 - -
Psa5g3407 170 CDD Ribosomal_L16_L10e 40 116 IPR016180 GO:0003735|GO:0005840|GO:0006412
Psa5g3407 170 Pfam Ribosomal protein L16p/L10e 70 116 IPR016180 GO:0003735|GO:0005840|GO:0006412
Psa5g3407 170 Gene3D - 130 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3407 Psa-Chr5 266490547 266491533 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3407 29 170 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 53.960 1.31e-62 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3407 K02866 - gmx:100779884 211.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3407 5 266490547 266491533 Psa5g3407 5 266490547 266491533 ECH