Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3404 ATGGCTGCAAGAAATATGGAGGTTGAATACATAACTGACGACTCCAGGAGAAAGGAAACATTCAGAAAAAGGAAGCAAGGTATCATTAGGAAGATGGATGAAATCACCACCCTTTGTGGAATTGAAGCATGTGGTATAATATATGATGAAAAAGAATCACAACCAACAATTTGGCCATCAAAAGATACATTTCATACATTGTTGGACAGATTTAAAAGTCTTCCTGAATCGGATCAAAGAAAAATGATGTTGGATCACAAGGGCTTCTTGAAGCAGACTATAGCAAAAGATCGAAAGAAATTAATGAAACAAAAGCACATCACCAAGAAAAATGAAATGAATAATTTACTTGATCATTTTATCCAAACAGGAGAGTTTGATGGAAATGATTTGAGTGAGAGTGATCTCGAAGATTTGTCATTGCTTATAGATAACAGTCTAAAAGGAGTCGAGCAGATGATGATGAAATAG 471 0.3482 MAARNMEVEYITDDSRRKETFRKRKQGIIRKMDEITTLCGIEACGIIYDEKESQPTIWPSKDTFHTLLDRFKSLPESDQRKMMLDHKGFLKQTIAKDRKKLMKQKHITKKNEMNNLLDHFIQTGEFDGNDLSESDLEDLSLLIDNSLKGVEQMMMK* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3404 156 PANTHER MADS BOX PROTEIN 3 152 - -
Psa5g3404 156 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Psa5g3404 156 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Psa5g3404 156 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Psa5g3404 156 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa5g3404 156 CDD MADS_SRF_like 4 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Psa5g3404 156 SUPERFAMILY SRF-like 4 94 IPR036879 GO:0003677|GO:0046983
Psa5g3404 156 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 3 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3404 Psa-Chr5 266307246 266308429 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3404 1 148 Type I MADS-box Gene Family AT3G05860 36.842 2.24e-30 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Psa5g3404 SRF-TF 5.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3404 - - mtr:MTR_2g035580 170.629