Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3393 ATGGATACCACGCTCTCCGTTCTCAAGGACTACTTTGGGTTTATGAGTTTTCGACCGTATCAGCAAGAGGTCATCGAGAAAATTATTGAGAAAAGGGATTGCTTGGTAGTTATGGCTACTGGTAGTGGCAAGTCATTGTGTTATCAAGTGCCTCCATTGGTTGTGAAAAAGACTGGGATAGTTGTAAGCCCTTTAATATCATTGATGCAGGATCAGGTAATGGCTTTGAAACAGCGAGGTATCAAAGCTGAATATCTTTCGAGCGCTCAGAAGGATTATACTATTCAGGGTAAAGCTGAGCGCGGTCAATTTGACATTCTGTTTATGACTCCTGAGAAGGCATGCACAATTCCTACAAGTTTCTGGTCCAACTTGCTAAAGGAAGGAATTAGTCTTTTTGCTGTTGATGAAGCACATTGTATATCAGAATGGGGGCATGACTTTAGGGTAGAATACAAGCAGTTAGACAAGTTACGTGGTGTTCATGATGAAGCACATTGTATATCAGAATGGGGGCATGACTTTAGGGTAGAATACAAGCAGTTAGACAAGTTACGTGGTGTTCTGTTAGATGTTCCTTATGTTGGTCTAACTGCAACGGCTACTGAAAAGGTTCGGTTTGACATCACCAATTCCTTGAAGTTGAATAATCCTTACATTGCTGTTGGTTCATTTGATCGCCCAAATCTTTTCTATGGTGTCAAGCAATTTAACCGAGGACAATATTTTATTGATGAGCTTGTGGAAGAAATTTCAAAAGAAGTTGCTAATGGTTGTTCAACTATAATTTACTGCACAACAATCAAAGATGTAGAGCAGATATATAAGTCACTTATGGAAGTCGGTATTAATGCTGGAATGTACCATGGGCAAATGGATGGAAGATCACGAGAGGAGTCTCATAGATTATTTGTTAGAGATGAAAAGCAAGTCATGGTGGCTACCATTGCCTTTGGCATGGGCATAGATAAACCTAATATAAGAAAAGTGATTCATTATGGCTGTCCTAAAAATCTAGAGTCCTACTACCAGGAAAGTGGGAGATGTGGTAGAGATGGTATAGCTTCTGCTTGTTGGCTTTACTACACAAGAAGTGACTTTTCAAAGGGCGACTATTATGCTGCAGATTTAAAATCGGACAACCAAAAAAAAGCTGTTATGGAGTCGTTGCTTGAGGCTCAACACTATTGTTTGACGGCAACTTGCAGAAGAAAGTTCTTGCTCGAACACTTCGGAGAAAAATTTGCAGCTGAGAGATGTGGAAATTGTGATAACTGCACGATCTTGAAGCAACATCGTGACATGTCAAAAGAAGCCTTTCTTCTATTGGCTTGCATTCACTCATGCAAGGGAAGATGGGGCCTTAATATGCCGATTGACATATTGCGCGGTTCTCGTGCAAAGAAAATAACGGAAGCTCAATATGACAAGCTTCCACTTCATGGACTTGGGAAAGCGTACCAAGCAAATTGGTGGAAAGCACTTGGACATCAATTAATTTCTCTAGGTTATTTGAAGGAGTTTGTCAGTGACGTGTACAGAAATGTAAGTGTCAGTTCAAAAGGAGAGCAATTTTTGGCCACATGTAGACCAGACTATCAACCTCCTTTGGTTTTGCCATTGATTGGTGAGCTCGCAGAAGAGGAAATTAGAAGCGCAGAAGAAATCAAAGTTTTGTCCGCTTCAGAATCTGAAGGTTTTTCAGAGGCTGAGGGAAAGCTCTACCAAATGCTTTTAGAAGAAAGATTAAATCTTGCAAGAAGTGTTGGAACTGCTCCATATGCTCTATGTGGTGATCAAACCATCAGAAAAATTGCTTTGACAAGACCATCTACAAAAGCAAGGCTAGCAAATATTGATGGAGTGAATCAGCACCTAGTAACAAGATATGGAGACCATTTTCTTCAAGCTATTCGGAAACTATCACAAGAATTAAACTTATCATTGGATGGTGAACCGGTATTCCAAACTAATGAAGTACGGAAAGTATCTCCGGTAGTAACAGTAAAATCAACGAAGTTGTCTGGAGCGAAGCTTGAAGCATGGAAAATGTGGCATGAAGAAGGTCTTTCTATTCAGAGGATTGCTAACTTTCCAGCTAGATCAGCTCCTATTCAAGAACAAACTGTTGTTCAGTATCTGCTGGACGCAGCTCTAGAAGGATTACCGATTGATTGGACAAGATTATGCGAGGCGATAGGGCTGAAACAAGATTACATATCAGCAATTCGAGGCGCTATTGTAAAAGCTGGATCTGCTGATAAATTGAAGCCTATAAAAAATGAATTGCCAGAAGAAATAACGTATCCGCACATCAAGGTTTACTTAACAATGCAAACCTGTGGAGTATCCTTAGAAAGTATCCAATCTGAAGGTCACCAGTCTGGAAAAGATGGTGAAACTGTAAACAATGCATCAAATTTGTCAGAACCATCTTCAGTAACACCCGACTCAGAAAGTCATCCTCAAGCTAACATTGCTACTGAAAGTATAATGGAAATTAATGAAGTGGTACCTTCTGAACCAGTCAATGTTTGCCAGGTACAAGAGTTTCCAACAAGCAAACGACTGAAAGTCAGCGACACAGAGGAAGTGAAAATAATTAAATTGAAAGCTACAGAGAGTTCTGTTGTAGAGTGGCTGCAGAGCCTTGATGAAGGGGCTACTTTGACTGAAATGTTGGAGCACTTCAATGGATCCAATAAAGATTCCATTGTTGAACTGCTAAGTTGCCTTGAGTGTGACTTTTCGATATATAAGAAAGTGGTTCAAAGTTGTGGTGATCTAAGATGGTAG 2796 0.4009 MDTTLSVLKDYFGFMSFRPYQQEVIEKIIEKRDCLVVMATGSGKSLCYQVPPLVVKKTGIVVSPLISLMQDQVMALKQRGIKAEYLSSAQKDYTIQGKAERGQFDILFMTPEKACTIPTSFWSNLLKEGISLFAVDEAHCISEWGHDFRVEYKQLDKLRGVHDEAHCISEWGHDFRVEYKQLDKLRGVLLDVPYVGLTATATEKVRFDITNSLKLNNPYIAVGSFDRPNLFYGVKQFNRGQYFIDELVEEISKEVANGCSTIIYCTTIKDVEQIYKSLMEVGINAGMYHGQMDGRSREESHRLFVRDEKQVMVATIAFGMGIDKPNIRKVIHYGCPKNLESYYQESGRCGRDGIASACWLYYTRSDFSKGDYYAADLKSDNQKKAVMESLLEAQHYCLTATCRRKFLLEHFGEKFAAERCGNCDNCTILKQHRDMSKEAFLLLACIHSCKGRWGLNMPIDILRGSRAKKITEAQYDKLPLHGLGKAYQANWWKALGHQLISLGYLKEFVSDVYRNVSVSSKGEQFLATCRPDYQPPLVLPLIGELAEEEIRSAEEIKVLSASESEGFSEAEGKLYQMLLEERLNLARSVGTAPYALCGDQTIRKIALTRPSTKARLANIDGVNQHLVTRYGDHFLQAIRKLSQELNLSLDGEPVFQTNEVRKVSPVVTVKSTKLSGAKLEAWKMWHEEGLSIQRIANFPARSAPIQEQTVVQYLLDAALEGLPIDWTRLCEAIGLKQDYISAIRGAIVKAGSADKLKPIKNELPEEITYPHIKVYLTMQTCGVSLESIQSEGHQSGKDGETVNNASNLSEPSSVTPDSESHPQANIATESIMEINEVVPSEPVNVCQVQEFPTSKRLKVSDTEEVKIIKLKATESSVVEWLQSLDEGATLTEMLEHFNGSNKDSIVELLSCLECDFSIYKKVVQSCGDLRW* 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3393 931 CDD SF2_C_RecQ 227 362 - -
Psa5g3393 931 Gene3D - 227 429 IPR027417 -
Psa5g3393 931 SMART hrdc7 568 648 IPR002121 GO:0003676
Psa5g3393 931 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 25 219 IPR014001 -
Psa5g3393 931 Pfam RecQ zinc-binding 378 427 IPR032284 -
Psa5g3393 931 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 243 392 IPR001650 -
Psa5g3393 931 SUPERFAMILY HRDC-like 567 648 IPR010997 GO:0000166|GO:0044237
Psa5g3393 931 CDD DEXHc_RecQ 5 226 - -
Psa5g3393 931 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 163 485 IPR004589 GO:0004386|GO:0006310
Psa5g3393 931 Pfam RQC domain 431 527 IPR018982 GO:0006260|GO:0006281|GO:0043138
Psa5g3393 931 PANTHER DNA HELICASE RECQ FAMILY MEMBER 7 160 - -
Psa5g3393 931 PANTHER DNA HELICASE RECQ FAMILY MEMBER 163 766 - -
Psa5g3393 931 SMART helicmild6 272 353 IPR001650 -
Psa5g3393 931 Gene3D - 161 226 IPR027417 -
Psa5g3393 931 Gene3D - 430 554 IPR036388 -
Psa5g3393 931 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 367 IPR027417 -
Psa5g3393 931 Gene3D - 2 160 IPR027417 -
Psa5g3393 931 Pfam HRDC domain 573 638 IPR002121 GO:0003676
Psa5g3393 931 Pfam Helicase conserved C-terminal domain 245 352 IPR001650 -
Psa5g3393 931 Gene3D HRDC domain 565 651 IPR044876 -
Psa5g3393 931 PANTHER WERNER SYNDROME ATP-DEPENDENT HELICASE 7 160 - -
Psa5g3393 931 PANTHER WERNER SYNDROME ATP-DEPENDENT HELICASE 163 766 - -
Psa5g3393 931 Pfam DEAD/DEAH box helicase 19 149 IPR011545 GO:0003676|GO:0005524
Psa5g3393 931 SMART ultradead3 13 237 IPR014001 -
Psa5g3393 931 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 221 IPR027417 -
Psa5g3393 931 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 225 475 IPR027417 -
Psa5g3393 931 ProSiteProfiles HRDC domain profile. 568 648 IPR002121 GO:0003676
Psa5g3393 931 Pfam Helix-turn-helix domain 679 776 IPR029491 -
Psa5g3393 931 SMART RQC_2 434 538 IPR018982 GO:0006260|GO:0006281|GO:0043138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3393 Psa-Chr5 265601075 265610001 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3393 262 366 Eukaryotic Initiation Factors Gene Family AT3G19760 27.778 4.16e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3393 K03654 - gmx:100797777 1333.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3393 5 265601075 265610001 Psa5g3393 5 265601075 265610001 ECH