Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3363 ATGGCGCCATCAAGAAAAAGGAATTTACATCAATGGAAGCATCCATTCGATGCTGATTATCCATTTGAAGCAGTATTGTCTGGCTCATGGCAACCTGTGAAACTCATTAAAGTTGAGTCCGGAAAAACTACCTTACATTTCATGAATTCTCAACAGATTCAAAGTCCTTTGTCATCATCATCCGATATTCGGATAGGATCAAGAAAAGCTACTTCATCTGATTGCTCCAACTTTCTACGATCTGGAATTGACATATCTATGCTATTAGGCTTTCGTCACTATGATGATAACTCATATCAATTTAGTCCTATTCCAATGTGGATCGATGCTAGGATAAATTCCATACACAGACAACCTCACGGCGAATCTGATAAATGTTCGTGTCAATTTTATGTGAACTTCTATGATGGTCAAGGTTCGCTTGGAACCGAGATGAAAACTCTTAGTAAAGATGATAACGCAATTGGAATCGACCAAATTTTTATCCTCCAGAGGCTTCAACATAATGCTTCTGAAGGTCTGTTAAAAGAAAATAAGAGTTCTGAAGTTAAGCCTTATAGGTGGGATTCATCGGAAGATTGCTCTTCATTATCGCAATCTAGATTGATTCTCGGGAAGTTTTTATCTGATCTTTCGTGGTTCGTTATGACGTCTTTCATAAAGAAGGTTTCGTTCAGTATAAGATCTTTTCAAAACAAGCTTGTGTATCAAGTTATGGGAAATGATACTGATGTTACTAGTCCTTTTGTGATAGATGTTGTGAACTTCAAACTTAAAAAGGGATCGCTAGTACCTATTATTTCTCAATTTGACGCGTTTCATGATTATGACGGTGAAGAAGATGAAACGTCGCCAATGCTGTCTAATGAGATTGGAGGCATAAGACGCTCGAAACGTAGGAATGTACAGCCCGAACGTTACGTAGGCTGTGCGGTTGAGAAGTTGGAAGTTGGTAGCTTTAGAACATGGCCATACAAGAGAGGAACTTATGTGAAAAAAAATGAAAACTCTTCTTCAGATTCAGATTCAGATTTAGAAGTGGATGATAGTGAAAGTGACGAAAAGGTTAATGAGGCGGAGAAAACCAATGAAGTAAAGTTAGGTGATGTCGAACAAAATGATCATGTAGATGAAATTTCTTCAAAATACGATAATTTGACTAATGCCATCGTTGAAGCAAAGAATAATGGTGATGATGCGTTGAATTTGGATCCCTCCAATGATCAGTCTGCAATATCGTGCGTTGAAGAAGTCGATGATAATGTCACTTTGGGACGTTATTATAGTTATTGCAGAGAAAAACTTAAGAGGAAGCAACTTCATCATGGTTTGGACGATATCGATTTTGGAAACAAATGGGAAGGGATTCTTTTCCAAAAGGGCGCTCAAACAAAAAGATTTCATTGGACAAACATAAGTCAGGTTCATGAACAACAGCACCATAAAGGCAGTAGAACGTCAAACGCCGATGCCTCCAAGGAAATAATCGATACATATATGAAGAATTTCTATAGTCTGCCAACTGAAGACGAGGAAAACGTTAACGAGCCGTTGCAGGAAACAAGCCAGTTGGAGGAGAAGGAGGAAGAAAACATATCGAATAGCGATGACGAGGAGGAAGAGAGTCCTGAGAATTTGGGAGCCCTGTGGGAAGAAATGGATTCAGCTTTGACATCAAGTTATCTTCTTAATGGGAATGAGGGTTCAAATGCTGCTGAGGTTTCGACTGATACCGAGAAAGAATCCAAGGAAGCTTGTGAACATGATTTTAGATTGGATGAAGAAATCGGAATATACTGCATTCGATGTGGTTTTGTGAAAACCGCAATACGAGACATTTCTGAACCCATTATGGAAAGTTCGAAATGGCACAAAGATGAGAAAAAATGCAGTAGAGAAGATAAGGAAGAGAAATCAGAGCCAAAAGTTGTTGAAGTTGATAATAAGGATCTGTTCAGAACTCATGCTAATGATCTTGATGAACCAATATCGAACGAAAATCAAAATGTTTGGGAATTGATTCCAGAACTCAAAGAAAAGATGCATGCACACCAGAAAAAGGCTTTTGAGTTTCTTTGGCGAAACATTGCAGGATCAATGGAACCAGCACTGATGAAAGAAAATTCTGAAACAAGTGGTGGCTGTGTTATATCTCATGCTCCCGGAGCAGGAAAAACGTTTCTCATCATTTCGTTTCTCGTAAGTTACTTGAAATTGTTTCCAGGGAAAAGACCATTAGTCCTAGCTCCGAAAACCACACTCTACACATGGCGAAAAGAGTTCAAGAAATGGAAGATTCCTGTGCCGGTGTATCTTATTCACGCCCGTCGAACCTCGAGACACTTAGCGACGCTAAAACCAACGATTCTTCCGGGAGTTCCAAAAGCTTCTAGTGATGTCAAACATGTTTTGGATTGTATCAACAAGATACAGAAATGGAATTCACACCCTAGTGTTCTTATCATGGGCTATACTTCGTTTTTATCGTTAATGAGATCGGAAGAATCGAAATTTGCACACAGAAAATACATGGCAAAAGCATTGAGAGAAAACCCGGGAATGTTGATACTTGATGAAGGACACAATCCTAGAAGCACAAAATCAAGGTTGAGGAAATGTTTAATGAAACTTCCAACAGAATTAAGGATACTACTTTCAGGCACATTGTTTCAGAACAATTTCTGCGAATATTTCAACACGCTTTGCTTAGCTAGACCGAAATTCGTTCACGAAGTTCTCCAAGAGTTGGATTCTAAATACAGAAAGAATGGAGAAATAGTGAAGAAAGCACCGCATTTACTCGAGACGAGAGCGAGGAAATTCTTCTTGGATAACATTGAAAAGAAAATTAACTCGGATATTGATGAAGAAAAAATGCTCGGTCTACACCTGCTGCGAAAAATCACCACCAGTTTTATTGATGTTTATGACAGTGGAAATTCTTCTGATACTCTTCCTGGTTTACAGATCTATACATTGCTCATGAACACGAGCGATGAACAATGCGAGATAATACAGAAACTTCAGAAGAAAATGGCTGAGTCCACTAGTTATCTTCTCGAGGTTGAACTTCTGATAACACTCGGATCGATACATCCGTGGTTGATCAAAACAGCAGCAGCATGTGCAGCTAAGTTTTTCGGCGATGAAGAACTGAAGAAGCTAGAAACAAGCAAATTCGATTTGAGAAAAGGTTCCAAAGTAAGATTTGTTCTGAGCCTAATCTCGCGCGTAGTGAAAAACGAAAAGGTTCTTATCTTTTGTCACAATCTCGCACCAGTGAGGTTTTTAATCGAGTTATTCGAGAAATACTTTCAGTGGCAAAACGGTAAAGAGATTCTGTTACTTACCGGCGAACTAGACTTGTTTGAAAGAGGCAAAGTGATAGATAAATTCGAAGATCCTCGCGGAAGTTCGAAGATACTTCTTGCTTCAATCAATGCTTGTGCTGAAGGTATAAGTCTAACGGCAGCGTCTAGGGTGATTTTTTTGGATTCTGAGTGGAATCCTTCGAAAACAAAGCAAGCTATTGCGCGCGCTTTTCGTCCGGGTCAGCAGAAAATGGTTTACGTGTATCAGTTATTGACAAACGGATCGTTGGAGGAAGATAAGCACAGAAGAACTGCATGGAAAGAGTGGATTTCTTGCATGATATTTAGTCAAGAGTTTGTCGAAGATCCTTCGAAATGGCAGGCTGAAAAGATCGAAGATAATATACTTAGGGAGATGGTTGAAGAAGATAAGTCTAAAGCCATTCATATGATTATGAAGAATGAAAAAGCTTCAACAACCTAA 3795 0.3903 MAPSRKRNLHQWKHPFDADYPFEAVLSGSWQPVKLIKVESGKTTLHFMNSQQIQSPLSSSSDIRIGSRKATSSDCSNFLRSGIDISMLLGFRHYDDNSYQFSPIPMWIDARINSIHRQPHGESDKCSCQFYVNFYDGQGSLGTEMKTLSKDDNAIGIDQIFILQRLQHNASEGLLKENKSSEVKPYRWDSSEDCSSLSQSRLILGKFLSDLSWFVMTSFIKKVSFSIRSFQNKLVYQVMGNDTDVTSPFVIDVVNFKLKKGSLVPIISQFDAFHDYDGEEDETSPMLSNEIGGIRRSKRRNVQPERYVGCAVEKLEVGSFRTWPYKRGTYVKKNENSSSDSDSDLEVDDSESDEKVNEAEKTNEVKLGDVEQNDHVDEISSKYDNLTNAIVEAKNNGDDALNLDPSNDQSAISCVEEVDDNVTLGRYYSYCREKLKRKQLHHGLDDIDFGNKWEGILFQKGAQTKRFHWTNISQVHEQQHHKGSRTSNADASKEIIDTYMKNFYSLPTEDEENVNEPLQETSQLEEKEEENISNSDDEEEESPENLGALWEEMDSALTSSYLLNGNEGSNAAEVSTDTEKESKEACEHDFRLDEEIGIYCIRCGFVKTAIRDISEPIMESSKWHKDEKKCSREDKEEKSEPKVVEVDNKDLFRTHANDLDEPISNENQNVWELIPELKEKMHAHQKKAFEFLWRNIAGSMEPALMKENSETSGGCVISHAPGAGKTFLIISFLVSYLKLFPGKRPLVLAPKTTLYTWRKEFKKWKIPVPVYLIHARRTSRHLATLKPTILPGVPKASSDVKHVLDCINKIQKWNSHPSVLIMGYTSFLSLMRSEESKFAHRKYMAKALRENPGMLILDEGHNPRSTKSRLRKCLMKLPTELRILLSGTLFQNNFCEYFNTLCLARPKFVHEVLQELDSKYRKNGEIVKKAPHLLETRARKFFLDNIEKKINSDIDEEKMLGLHLLRKITTSFIDVYDSGNSSDTLPGLQIYTLLMNTSDEQCEIIQKLQKKMAESTSYLLEVELLITLGSIHPWLIKTAAACAAKFFGDEELKKLETSKFDLRKGSKVRFVLSLISRVVKNEKVLIFCHNLAPVRFLIELFEKYFQWQNGKEILLLTGELDLFERGKVIDKFEDPRGSSKILLASINACAEGISLTAASRVIFLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLTNGSLEEDKHRRTAWKEWISCMIFSQEFVEDPSKWQAEKIEDNILREMVEEDKSKAIHMIMKNEKASTT* 1265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3363 1264 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 983 1249 IPR027417 -
Psa5g3363 1264 Pfam SNF2-related domain 690 954 IPR000330 GO:0005524|GO:0140658
Psa5g3363 1264 SMART ultradead3 677 915 IPR014001 -
Psa5g3363 1264 MobiDBLite consensus disorder prediction 506 544 - -
Psa5g3363 1264 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 22 1263 - -
Psa5g3363 1264 MobiDBLite consensus disorder prediction 624 643 - -
Psa5g3363 1264 Gene3D - 649 943 IPR038718 -
Psa5g3363 1264 Pfam Helicase conserved C-terminal domain 1067 1183 IPR001650 -
Psa5g3363 1264 MobiDBLite consensus disorder prediction 530 544 - -
Psa5g3363 1264 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 22 1263 IPR044567 GO:0080188
Psa5g3363 1264 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 644 920 IPR027417 -
Psa5g3363 1264 MobiDBLite consensus disorder prediction 354 374 - -
Psa5g3363 1264 Coils Coil 518 538 - -
Psa5g3363 1264 CDD SF2_C_SNF 1066 1195 - -
Psa5g3363 1264 Gene3D - 986 1264 IPR027417 -
Psa5g3363 1264 SMART helicmild6 1099 1184 IPR001650 -
Psa5g3363 1264 MobiDBLite consensus disorder prediction 333 374 - -
Psa5g3363 1264 CDD DEXHc_ATRX-like 681 949 - -
Psa5g3363 1264 Coils Coil 376 396 - -
Psa5g3363 1264 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1070 1236 IPR001650 -
Psa5g3363 1264 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 706 907 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3363 Psa-Chr5 262477572 262482089 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3363 1081 1202 RAD5 or RAD16-like Gene Family AT5G05130 35.772 2.63e-12 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa5g3363 SNF2_N 2.2e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3363 K10875 - gmx:100811703 1326.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3363 5 262477572 262482089 Psa5g3363 5 262477572 262482089 ECH