Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3341 ATGTCAAGCAAGAAGAAACACAAACGAAAACACAGCGACATCGATGAAGACGACGACGTTTTCTACTACCGCTACTGCGCTTCGTCCTCAACCCCCAACACCACCACCGGCACCACATCCAGTAATCAACCCCAATCAAAACCGAACAACAAAGGATCATCAATAGGAGGAACAGGTGAACCCTTAGCACCATCAAAATCGACGCTATACGTTTCTAATCTAGATTACTCCCTAACAAACTCCGATCTCCATACGCTCTTCTCTACTTTCGGCCGCATCGCGCGTGTAACCGTTCTCAAAGACCGTCACACGCGCCTAAGCCGCGGTGTCGCGTTTGTCCAATTCGTTTCTCGTAATGACGCCCAACGCGCCGTGGCGGAGATGAATAAGAAGATTCTCAATGGAAGGACTCTAACTGCTTCTATTGCTGCTGATAATGGACGTGCTCCGGAGTTTATTCGGAAGCGCGTGTACAATACTGAGACTGCTTTGTGTTATGAGTGTGGGGGGCATGGTCATTTGTCGTATGAGTGTCCTAAGAATCAGTTGGGGCCGAGGCCGCGGCCTCAGCCTAAGAAGCCGCGACGGGGATTTAGTGGGCTGAGGGATAGGGATGGGGAGGAGGAAGGTGATGAGGAGGAGGAGGAGGGTGGTCAGATTGCTGCGGAGCAGTTTGACGATAATTGGGCTTCTGTTGTGGATGATGAAGCGGGTGAAAGGTTGCTGGGGAGAAACAGAAATGATGATGAGGGTTTGGACAACAACAAGACGAAGAAGAAAGGGAAGAAAGCTGGGTATTTCAGTGATGAGAGTGATCATGATGATGATGATTGA 834 0.4988 MSSKKKHKRKHSDIDEDDDVFYYRYCASSSTPNTTTGTTSSNQPQSKPNNKGSSIGGTGEPLAPSKSTLYVSNLDYSLTNSDLHTLFSTFGRIARVTVLKDRHTRLSRGVAFVQFVSRNDAQRAVAEMNKKILNGRTLTASIAADNGRAPEFIRKRVYNTETALCYECGGHGHLSYECPKNQLGPRPRPQPKKPRRGFSGLRDRDGEEEGDEEEEEGGQIAAEQFDDNWASVVDDEAGERLLGRNRNDDEGLDNNKTKKKGKKAGYFSDESDHDDDD* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3341 277 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 138 IPR000504 GO:0003723
Psa5g3341 277 Pfam Zinc knuckle 165 180 IPR001878 GO:0003676|GO:0008270
Psa5g3341 277 ProSiteProfiles Zinc finger CCHC-type profile. 165 180 IPR001878 GO:0003676|GO:0008270
Psa5g3341 277 Gene3D - 33 222 IPR012677 -
Psa5g3341 277 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 13 275 IPR044598 GO:0000398|GO:0005689
Psa5g3341 277 MobiDBLite consensus disorder prediction 233 270 - -
Psa5g3341 277 MobiDBLite consensus disorder prediction 30 56 - -
Psa5g3341 277 MobiDBLite consensus disorder prediction 30 61 - -
Psa5g3341 277 CDD RRM_ZCRB1 66 143 IPR034219 -
Psa5g3341 277 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 13 275 - -
Psa5g3341 277 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 145 IPR000504 GO:0003723
Psa5g3341 277 SUPERFAMILY Retrovirus zinc finger-like domains 155 181 IPR036875 GO:0003676|GO:0008270
Psa5g3341 277 SUPERFAMILY RNA-binding domain, RBD 63 150 IPR035979 GO:0003676
Psa5g3341 277 SMART rrm1_1 68 141 IPR000504 GO:0003723
Psa5g3341 277 MobiDBLite consensus disorder prediction 206 221 - -
Psa5g3341 277 SMART rrm2_1 68 141 IPR003954 GO:0003676
Psa5g3341 277 SMART c2hcfinal6 164 180 IPR001878 GO:0003676|GO:0008270
Psa5g3341 277 MobiDBLite consensus disorder prediction 180 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3341 Psa-Chr5 261792668 261794056 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3341 66 129 Eukaryotic Initiation Factors Gene Family AT3G11400 45.312 1.82e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3341 K13154 - gmx:100814914 301.597