Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3340 ATGAAGCTTTCAACATCAGGGTTGGGTCATCAGGGACATGAAGGAGGGGAGAAGAAGTGTCTGAATTCTGAGCTATGGCATGCATGTGCGGGGCCCTTAGTGTCCCTACCAACTGCAGGAACTCGTGTGGTTTACTTCCCTCAGGGTCATAGTGAACAGGTATCTGCCACAACGAATCGCGAAATCGATGGGCACATACCGAATTACCCTAGCTTGCCACCTCAGTTGGTTTGCCAGCTTCACAATGTCACTATGCATGCTGATGTTGAAACAGATGAAGTATATGCTCAAATGACACTACAGCCGCTGACCCCGGAAGAGCAGAAGGATACATTTCTTCCTATGGAATTGGGAATTCCAAGTAAGCAGCCCTCAAACTATTTTTGCAAGACTTTAACAGCCAGTGACACCAGCACACATGGAGGATTCTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTTCCTCCGCTGGATTTCTCACAGCAACCACCAGCACAAGAACTAATTGCTAGGGATCTCCATGATGTTGAATGGAAGTTTCGACACATTTTTCGGGGACAGCCAAAACGGCACCTTCTTACAACAGGCTGGAGCATATTTGTTAGTGCCAAGAGACTGGTTGCTGGAGATTCAGTGCTTTTCATATGGAATGAGAAGAATCAGCTTCTTTTGGGAATTCGTCGAGCTAATCGACCGCAAACTGTAATGCCGTCATCAGTTCTGTCCAGTGATAGTATGCATATTGGACTTCTTGCAGCCGCTGCTCATGCTGCAGCAACTAATAGCTGTTTTACCGTCTTCTATAATCCAAGGGCTAGTCCATCTGAGTTTGTCATATCACTTTCGAAATATATCAAAGCTGTGTACCATACACGTATTTCTGTTGGTATGCGCTTCAGGATGCTTTTCGAGACTGAAGAATCAAGTGTCCGCAGGTACATGGGTACAATAACCGGGATAAGTGATCTGGATGCTGTTCGGTGGCAGAATTCTCATTGGCGCTCGGTCAAAGTCGGTTGGGACGAATCAACAGCAGGAGAGAGACAGCCACGGGTTTCATTATGGGAAATTGAGCCTTTAACAACATTCCCAATGTATCCATCATTGTTTCCTCTCAGATTGAAACGTCCGTGGCATCCTGGCACCTCATCTTTGCTTGATGGAAGAGATGAAGTCGCAAATGGTCTAATGTGGATGAGAGGTGGACCTGCAGATCAAGGTCTCAATTCCCTTAATTTTCAAGGTGCTTCTGGCATGTTGCCATGGATGCAGCAGAGACTAGATCCAACTTTACTCGGAAACGATCAGAATCAACAATACCAAGCCATGTTGGCGGCAGCTGGAATGCAGAACATGGGTAGTAGTGGATATCTCATGAGGCCACAGATGATGAATTTTCAACAACAGCCTATCCAGTACCTTCAGTCGGGAAACAATAATTCACCTTTGCAACTTCAGCAACCGCACGCAATTCCACAATCGGTGTCCTCTAGTATGATGCAACCACAAGGCCAAGTACTTACTGAAAACCTGTCTCAACACCTCCTTCAGAAAACAAATAACAATCAAGAAGTCCAAGCTCAACAGCAGCAACATGCTTATCAAGATTCACTTCTTATTCAAAATGATCAACTCCATCAGAGACAACAACAACAACAGTCCAATGTGCCATCACCGTCGTACTCAAAACAAGATTTCCTGGATTCAAACTTGAAGTTTCCTGCTTCGGCTTCCTCCGGACAAAACATGCTTGGTTCGCTTTGCAATGAAGGAACTGGAAATCTCTTGAATCTATCAAGTCTATCCAGAAGCGGTCAGTCGATGATGGCCGAACAGTTACCGCAACAATCATGGACTCCGAAGTATGGGAATATGCAGGTCAATGCATTTAGTAACACAATGTCGCATGCACACTTTTCTGGAAAAGATTTGGCAATGGCGCCACATTGTGATTCAGATGCCCAAAACCATACTCTCTCGGGTGTCAATATCGATTCATCTGGCCTTCTACTCCCCACGACTGTCCCAGGTTACACCACTTCATCGGCTGACACTGGTGCGTCAACAATGCAACTAGGGGAGTCGGGATTCCAGAGTTCTCTATACGCCTGCATGCAAGATTCATCTTCATTTTTGCAAAATGCAGAGCAAGGCGACCCACAAAACCAGAACCCAACATTTGTGAAGGTTTACAAATCGGGTTCGGTTGGGCGTTCACTTGACATCTCTCGGTTCAACAGCTATCGTGAGCTGCGAGAGGAGTTGGGTCAGATGTTTGGAATTGAGGGGAAGTTAGAAGATCCTCTTAGATCAGGCTGGCAGCTTGTGTTCGTCGACCGGGAGAATGATGTGCTTCTCCTTGGCGACGATCCGTGGGAATCATTCGTGAATAACGTTTGGTATATCAAAATACTTTCACCGGAAGATATTCAGAAGATGGGAGAAGAAGCGGTAGAAACGCTTGCTCTAGGTTCAGGACAGAGGCTCAACGGCACCGGCGAATCTCACCACATTGTTTCTGGACAACCACCATCAATTGGCTCACTTGAATACTGA 2556 0.4609 MKLSTSGLGHQGHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVSATTNREIDGHIPNYPSLPPQLVCQLHNVTMHADVETDEVYAQMTLQPLTPEEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVISLSKYIKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDAVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSLLDGRDEVANGLMWMRGGPADQGLNSLNFQGASGMLPWMQQRLDPTLLGNDQNQQYQAMLAAAGMQNMGSSGYLMRPQMMNFQQQPIQYLQSGNNNSPLQLQQPHAIPQSVSSSMMQPQGQVLTENLSQHLLQKTNNNQEVQAQQQQHAYQDSLLIQNDQLHQRQQQQQSNVPSPSYSKQDFLDSNLKFPASASSGQNMLGSLCNEGTGNLLNLSSLSRSGQSMMAEQLPQQSWTPKYGNMQVNAFSNTMSHAHFSGKDLAMAPHCDSDAQNHTLSGVNIDSSGLLLPTTVPGYTTSSADTGASTMQLGESGFQSSLYACMQDSSSFLQNAEQGDPQNQNPTFVKVYKSGSVGRSLDISRFNSYRELREELGQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEEAVETLALGSGQRLNGTGESHHIVSGQPPSIGSLEY* 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3340 851 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 836 IPR044835 GO:0003677|GO:0006355|GO:0009725
Psa5g3340 851 SMART B3_2 128 230 IPR003340 GO:0003677
Psa5g3340 851 SUPERFAMILY CAD & PB1 domains 723 799 - -
Psa5g3340 851 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Psa5g3340 851 Gene3D - 126 229 IPR015300 -
Psa5g3340 851 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Psa5g3340 851 CDD B3_DNA 127 228 IPR003340 GO:0003677
Psa5g3340 851 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
Psa5g3340 851 PANTHER AUXIN RESPONSE FACTOR 1 836 - -
Psa5g3340 851 Gene3D - 292 364 - -
Psa5g3340 851 ProSiteProfiles PB1 domain profile. 725 809 IPR000270 GO:0005515
Psa5g3340 851 Gene3D - 721 814 - -
Psa5g3340 851 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Psa5g3340 851 Pfam AUX/IAA family 713 809 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3340 Psa-Chr5 261697948 261705350 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3340 98 817 B3 DNA Binding Superfamily AT5G37020 67.627 0.0 905
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Psa5g3340 AUX_IAA 1.8e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3340 - - gmx:100784373 1433.31