Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3337 ATGTTGCTTTCAAACTCATTATCGTTATGCTCAGGCCAAAAGTCTGGTTTTGTTGATGCCCTCTGCAACTTTATCATCTCAACAAGAAAATGTTGCAACCATCCTTATCTCCTTGACCCAACACTGAGTAGTTTGGTCACTAGAGGTCTACCTGTTGAAGAACATTTAGATATTGGAATAAAAACAAGTGGAAAATTGCAACTTCTTGAAAAGACCCTCGTTGAAGCTAAAAGTCAAAAGGTCTTAATGCTTGCAAAAGAGGGTGTAACTCTTGACAGTAAAGTGCAGTTGGTTAACCAGAGTACTAATCACAGCCTGCTAAAATGGGGTGCCGCTTATCTGTTCAAGAGTCCGGAGTCTATAACACAGACGGGAACGTCACATTGTAGCACTTCTCACAGAGTTTCTGAGTATCAAGAATGCTTGGACCACAATGATCAAATGTCCAAGCCAGGTTGGAAAGACATATTCCGGATGAATCAGACTGAACTTGAGTCGGAGATTCGGAAGGATGCTTCTTACAGTTCCATAAATGCTTTAATAGAAGGTGTTAAGTACTCTGAATCTGATGATTTTGGAATGAATCTTCTTACTAGTGCAACCACGCCAAATGATGTAAATAGCTCCAGTAAAATCGTGCTCGCCAGAACAACAAAAATTGTTGCTGCTGTTTCTGCACTTATTGTTGTCGAAAGAACCGGTCGATTCTTGAAGAAAGATGCAACTACACTCACTCAGGCTGGTTATGTTGGAGAAGATGTGGAGTCCATATTATACAAGCTCCTCATGGCTGCAGATTATAACGTGGCAGCTGCTCAGCAAGGCATTGTTTACATTGATGAAGTTGACAAGATTACCAAAAAGTCTGAGAGCCTTAATATCAGTAGAGATGTCTCCGGTGAAGGTGTTCAGCAGGCATTACTGAAAATGCTTGAGGGAACGATTGTCAATGTTCTTGAAAAGGGAGCTCGAAAGCATCTGAGAGGTGACAATATTCAGATTGACACAAAGAATATACTTTTCATCTGCGGAGGAGCCTTCATTGACTTAGAGAAAACAATTTCAGACAGGCGCCAAGACTCTTCTGTTGGATTTGGAGCACCCGTACGTACAAAGATGAAATCCAGAAGTATCACCGAGGCGGCTGTTGCATCATCCTTATTAGGAACTATTGAAGAACAATTCAGAGACAGTGGAGATTTCTGGCGGAGATCAAGAAGCAGAAACAAAACACCCTTCATCGGGCTGATAAAGCCAAGGAGATTCGAACAAAGGCACCTGATGCAAATGAGGACCTATTACCGGCCAAGACGCACTCTTCTTGTTCGACCAAATGATTCCCTCGCACGCCGAAACAATGATTCTGAAGCTAGCACTGTTGTTAACCCTTCTCAAGATGCAAATGTTCACACCAAAGTTCCTCAAGGGGCCGATGATGAAAAGGCCATTGAGTTGGAGAGCTCTGTTGAGTTGCATGCCACTTCTTCCAAAGCATTGCTTATAATTGGATCGCATATGCCAGAGGTGGTAGCATCACATTATGCTCTCAAAGTTTCATGGCTTAAGCAACTACTACTGAATCATGTAGATTGGGACACTCGGGAATCCATTGCATGTTTACTTGGAATCGTGTCTTCTGCTCTTCCTCTGCCTGCAACATCTGATGTTATTTCGGAATTAACTTCAATTTTCAGCCAAAAACATAAGCCTAGATTTGAGACTCAGCCCGGTGCGCTTTGTGCAATAGGATATATCACTGCAGATTATTTGTCTAGAGCACTTATGCCAGAAATTTCTCTCCGGAAAACACTTAGATGCCTAGTTGATGTGGTTAATTCTGAAACTTCTGCTTTTGCTGCTGTTGCAATGCAAGCTTTAGGTCATATTGGACTGCGTATTTCTTTACCTCCACTTGAGGATTCTAATTCAGATGGAACTCTCATGCTTCTATATGATAAACTGATTATCCTCCAAGTTGGCTTAGGTTGA 1989 0.4193 MLLSNSLSLCSGQKSGFVDALCNFIISTRKCCNHPYLLDPTLSSLVTRGLPVEEHLDIGIKTSGKLQLLEKTLVEAKSQKVLMLAKEGVTLDSKVQLVNQSTNHSLLKWGAAYLFKSPESITQTGTSHCSTSHRVSEYQECLDHNDQMSKPGWKDIFRMNQTELESEIRKDASYSSINALIEGVKYSESDDFGMNLLTSATTPNDVNSSSKIVLARTTKIVAAVSALIVVERTGRFLKKDATTLTQAGYVGEDVESILYKLLMAADYNVAAAQQGIVYIDEVDKITKKSESLNISRDVSGEGVQQALLKMLEGTIVNVLEKGARKHLRGDNIQIDTKNILFICGGAFIDLEKTISDRRQDSSVGFGAPVRTKMKSRSITEAAVASSLLGTIEEQFRDSGDFWRRSRSRNKTPFIGLIKPRRFEQRHLMQMRTYYRPRRTLLVRPNDSLARRNNDSEASTVVNPSQDANVHTKVPQGADDEKAIELESSVELHATSSKALLIIGSHMPEVVASHYALKVSWLKQLLLNHVDWDTRESIACLLGIVSSALPLPATSDVISELTSIFSQKHKPRFETQPGALCAIGYITADYLSRALMPEISLRKTLRCLVDVVNSETSAFAAVAMQALGHIGLRISLPPLEDSNSDGTLMLLYDKLIILQVGLG* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3337 662 SUPERFAMILY ARM repeat 388 639 IPR016024 -
Psa5g3337 662 PANTHER CLP PROTEASE REGULATORY SUBUNIT CLPX1, MITOCHONDRIAL 235 392 - -
Psa5g3337 662 Gene3D - 2 101 IPR027417 -
Psa5g3337 662 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 235 375 IPR027417 -
Psa5g3337 662 Pfam AAA domain (Cdc48 subfamily) 219 372 IPR003959 GO:0005524|GO:0016887
Psa5g3337 662 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 235 392 - -
Psa5g3337 662 Gene3D - 209 394 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3337 Psa-Chr5 261634209 261637904 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3337 79 170 C2H2 Transcription Factor Family AT3G18290 36.458 4.33e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3337 K03544 - gmx:100779768 267.314