Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3329 ATGATTTGTGGAACTCAAACAGCAAATGGAGCAGCTGCTTTTACTGCGGCTGCACAACAAGTCCTGATGAATCTACAAACAGCCACACCCAAAATTACTGGTTTCTTTGCTGCTACAAAGACACCAGTTTCTGGAACTGGAAACGCAATCTATGCCATTGCACAATGTGCTGAATCAGTTACTCAAAGTGGCTGCTTAGATTGCTTGACAGTTGGATTCAACAACATACAGAGCTGTTTTCCTAATACAGATGGTAGAGCATTTGATGCTGGTTGTTTTATGAGATACTCAGAAACATCTTTCTTTGCTGATAACCAGACCATTGATATTACACCGTTTCTAAAACAAGGTTCAAGTAAGAAGGGAGCCATAATTGGTGGTATTGTTGGAGGTGTGGCCCTTATTGTGATCATCCTCATTGCACTATTTGTTTGGCTTAGGCTTTACAAGAAACCCAAGAGACATCATAGAGGTGACATATTAGGAGCAACTGAGTTGAAAGGTCCACTTACATACCGATATAACGATTTGAAGTCTGCAACTAAAAATTTTAATGAGGAAAATAAACTAGGAGAAGGAGGTTTTGGAGATGTATACAAGGGAACTCTGAAGAATGGTAAAGTAGTCGCTGTCAAGAAATTGATTTTAGGTCATTCCGGGAAGATGGATGAACAATTTGAAAGTGAAGTGAAGCTGATAAGTAATGTTCATCACAGGAATTTAGTTCGACTTCTCGGATGTTGCAGTAAAGGCCAAGAAAGAATCCTTGTTTATGAATACATGGCAAACAACAGCCTTGACAGATTCTTATTCGGTGAAAAGAAGGGTTCCCTTAATTGGATTCAAAGGTATGATATAATTTTAGGCACAGCAAGAGGTTTGGCCTATCTGCATGAAGATTTCCATGTTTGCATCATACATAGAGACATAAAGACTAACAACATCCTCTTGGATGATGATCTTCAACCTAAAATTGCTGATTTCGGGTTGGCAAGGCTTTTACCAGAAGATCAATCTCATCTTAGCACAAGATTTGCAGGAACATTGGGATACACTGCACCAGAATACGCGATCCACGGTCAGTTATCAGTGAAGGCTGATACCTACAGTTTTGGTGTTGTAGTCCTAGAAATAGTAAGTGGCCAAAAGAGTAGTGAGTTAAGGGATGATGCTGATGGTGAATTCCTTCTTCAAAAAGCTTGGAAACTATATGAGGAAGAAAGACACTTGGAGTTAGTTGACAAGACATTGAACACTAGTGACTATGATGCACAAGAAGTGAAGAAAGTTATAGAGATTGCATTACTTTGCACTCAAGCAACAGCTGCTACAAGACCAACTATGTCTGAAGTAGTAGTTCTACTGAAAAGCAAGAACTTTGTGGAGCATATGAAACCAACCATGCCTGTCTTTGTTAACAGTAACTTAAGACCTCGGACGGATACCTCTACCTCAACCGCTTCTTCAAAATCTAACGCTACTGTTTCCACTTCTGTATTATCAGCTAGATGA 1512 0.3955 MICGTQTANGAAAFTAAAQQVLMNLQTATPKITGFFAATKTPVSGTGNAIYAIAQCAESVTQSGCLDCLTVGFNNIQSCFPNTDGRAFDAGCFMRYSETSFFADNQTIDITPFLKQGSSKKGAIIGGIVGGVALIVIILIALFVWLRLYKKPKRHHRGDILGATELKGPLTYRYNDLKSATKNFNEENKLGEGGFGDVYKGTLKNGKVVAVKKLILGHSGKMDEQFESEVKLISNVHHRNLVRLLGCCSKGQERILVYEYMANNSLDRFLFGEKKGSLNWIQRYDIILGTARGLAYLHEDFHVCIIHRDIKTNNILLDDDLQPKIADFGLARLLPEDQSHLSTRFAGTLGYTAPEYAIHGQLSVKADTYSFGVVVLEIVSGQKSSELRDDADGEFLLQKAWKLYEEERHLELVDKTLNTSDYDAQEVKKVIEIALLCTQATAATRPTMSEVVVLLKSKNFVEHMKPTMPVFVNSNLRPRTDTSTSTASSKSNATVSTSVLSAR* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3329 503 Pfam Salt stress response/antifungal 3 98 IPR002902 -
Psa5g3329 503 MobiDBLite consensus disorder prediction 474 503 - -
Psa5g3329 503 Gene3D Phosphorylase Kinase; domain 1 150 260 - -
Psa5g3329 503 Gene3D Transferase(Phosphotransferase) domain 1 261 468 - -
Psa5g3329 503 Gene3D - 1 101 IPR038408 -
Psa5g3329 503 SMART serkin_6 184 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g3329 503 ProSitePatterns Serine/Threonine protein kinases active-site signature. 305 317 IPR008271 GO:0004672|GO:0006468
Psa5g3329 503 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 1 500 - -
Psa5g3329 503 CDD STKc_IRAK 190 456 - -
Psa5g3329 503 ProSitePatterns Protein kinases ATP-binding region signature. 190 213 IPR017441 GO:0005524
Psa5g3329 503 ProSiteProfiles Protein kinase domain profile. 184 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g3329 503 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 500 - -
Psa5g3329 503 ProSiteProfiles Gnk2-homologous domain profile. 1 101 IPR002902 -
Psa5g3329 503 Pfam Protein tyrosine and serine/threonine kinase 187 453 IPR001245 GO:0004672|GO:0006468
Psa5g3329 503 SUPERFAMILY Protein kinase-like (PK-like) 168 477 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3329 Psa-Chr5 261407209 261413117 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3329 50 503 Receptor kinase-like Gene Family AT4G21410 39.959 3.26e-110 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Psa5g3329 PK_Tyr_Ser-Thr 1.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3329 - - gmx:100813585 764.992