Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3320 ATGATGATGCAACTTAAAGTAGTCCTCACAACGTTGGTGTGTTGGAGCATAATAATTAGTTATCACTGTGTAGTTGGAGATTCACAAACAAGTACTGTACTGAACAGTGGATGCAGCACATTTAACGCATCAAATTTGCGTAGCTTCTATGCAAACATTAATGGAACATTTTCAGATTTGAGAAATCAAATTAGCAATGGAAGCAAACACTTTGCAATAGCACAAGAGGCGAGAGGAGAGGTAATAGTATATTCTCTTTTTCAATGCAGAAATTACCTCTCCAAAAAGGATTGTGTTGCTTGCTTCAACACCGCTTCTACTCAAATTCGTAACTGTTCAGCTTCCAATGGTGCCAGACTCATATATGATGGATGTTTCCTAAGGTACGAGAGTGAAAGATTCTACGATCAAACAAAACAACCTGGGGGTGGTATATTATGTGGGAACAAGACTGCAAAGGAAGGTGCCTCTTTTGGAACTACTGGACAAAAAGTGCTAATGGATCTCCAATTAGCAACACCAAAAATTAAAGGCTTTTTTGCAGCTACGAAGACTCTGGTGAATCCTGGTAGCAATAGTTCAATTTATGCCATTGCACAGTGTGTCGAAACTGCCACAGAAAGTACTTGTCTTGATTGCATGACAGCTGGACTCAACAACTTGCAAACTTGTCTCCCTAATACAGATGGTAGAGCATATGATGCAGGGTGTTTTATGAGATATTCGGAGACACCCTTTTTTGCTGATAATCAGGCCATTGATATCACAAACTATTTAAATCAAGGAGGTTCAAGCAACAAATGGGCCATTATAGGTGGTGTTGTTGGAGGTGTAGGTCTTGTTGCGATCCTTCTTGCAATTTTAGCTTGGCGACAATACAGAAAACCCAAGAGAGCTCCTAGAGGCAACATATTGGGAGCAACTGAGTTGAAAGGTCCAGTTAACTACAAGTATAGTGATTTGAAAGCTGCAACAAAAAACTTCAGTGAAGAAAATAAACTGGGAGAAGGAGGCTTTGGTGATGTATACAAGGGTACTCTGAAAAATGGAAATGTTGTAGCAGTCAAGAAACTGGTTTTGGGAAAATCCAGCAAGATAGACAATGATTTTGAAAGTGAAGTAAAGCTTATAAGCAATGTTCATCATAGGAATCTTGTTAGACTTCTTGGTTGTTGCAGTAAAAAACAAGAGAGAATCCTTGTTTATGAATACATGGCAAACAGCAGCCTAGACAAATTCTTATTCGGTGACAGACAAGGTTCCCTCAATTGGAAACAAAGGCGTGGTATAATTTTAGGCACAGCAAGGGGACTGGCCTATCTACATGAGGAATTCCACATTTCCATTATACATAGAGATATAAAGACTAGCAATATCCTCCTTGATGATAATCTTCATCCCAAAATTGCTGATTTTGGATTGGCGCGGCTTCTGCCGGGGGATCGATCTCATCTAAGCACAGGAGTTGCAGGAACATTGGGATACACAGCACCTGAGTATGCAATCCATGGTCAATTATCAGAAAAGGCTGATACCTACAGCTATGGTATTGTAGTCCTAGAAATCATAAGCGGTCAAAAGAGTACAGAAGTGAAGAAAGATGATGATGGTGAATACCTTCTTCAAAAATCATGGAAACTGCATGAGAGAGGCATGCACTTGGAGCTCATGGACAAGGCTTTAGACCCTAATGACTATGATGGAGAAGAAGTGAAGAAAATGATAGAGATTGCTTTACTATGCACTCAAGCATCAGCAGGAATGAGACCAACAATGTCTGAAGTAGTAGTTCTCCTCCAAACCAGGAGTTTAGTGGAGCACCTACAACCAACTATGCCTGTGTTTGTAGATACGAATCTTAGGTCTCGTGAAGGACACTCTACCTCAACTGGTTCTTCTACATCTAATGCTACTGCCTCCTTTTCAATTTTATCAGCTCGATGA 1944 0.4017 MMMQLKVVLTTLVCWSIIISYHCVVGDSQTSTVLNSGCSTFNASNLRSFYANINGTFSDLRNQISNGSKHFAIAQEARGEVIVYSLFQCRNYLSKKDCVACFNTASTQIRNCSASNGARLIYDGCFLRYESERFYDQTKQPGGGILCGNKTAKEGASFGTTGQKVLMDLQLATPKIKGFFAATKTLVNPGSNSSIYAIAQCVETATESTCLDCMTAGLNNLQTCLPNTDGRAYDAGCFMRYSETPFFADNQAIDITNYLNQGGSSNKWAIIGGVVGGVGLVAILLAILAWRQYRKPKRAPRGNILGATELKGPVNYKYSDLKAATKNFSEENKLGEGGFGDVYKGTLKNGNVVAVKKLVLGKSSKIDNDFESEVKLISNVHHRNLVRLLGCCSKKQERILVYEYMANSSLDKFLFGDRQGSLNWKQRRGIILGTARGLAYLHEEFHISIIHRDIKTSNILLDDNLHPKIADFGLARLLPGDRSHLSTGVAGTLGYTAPEYAIHGQLSEKADTYSYGIVVLEIISGQKSTEVKKDDDGEYLLQKSWKLHERGMHLELMDKALDPNDYDGEEVKKMIEIALLCTQASAGMRPTMSEVVVLLQTRSLVEHLQPTMPVFVDTNLRSREGHSTSTGSSTSNATASFSILSAR* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3320 647 Pfam Salt stress response/antifungal 150 243 IPR002902 -
Psa5g3320 647 Pfam Salt stress response/antifungal 42 131 IPR002902 -
Psa5g3320 647 ProSiteProfiles Gnk2-homologous domain profile. 140 246 IPR002902 -
Psa5g3320 647 ProSitePatterns Protein kinases ATP-binding region signature. 334 357 IPR017441 GO:0005524
Psa5g3320 647 Gene3D Transferase(Phosphotransferase) domain 1 405 610 - -
Psa5g3320 647 Gene3D Phosphorylase Kinase; domain 1 297 404 - -
Psa5g3320 647 Gene3D - 144 246 IPR038408 -
Psa5g3320 647 Gene3D - 30 134 IPR038408 -
Psa5g3320 647 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 22 644 - -
Psa5g3320 647 SUPERFAMILY Protein kinase-like (PK-like) 313 616 IPR011009 -
Psa5g3320 647 Pfam Protein kinase domain 329 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g3320 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 449 461 IPR008271 GO:0004672|GO:0006468
Psa5g3320 647 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 22 644 - -
Psa5g3320 647 CDD STKc_IRAK 334 600 - -
Psa5g3320 647 SMART serkin_6 328 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g3320 647 ProSiteProfiles Protein kinase domain profile. 328 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g3320 647 ProSiteProfiles Gnk2-homologous domain profile. 31 134 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3320 Psa-Chr5 260492130 260499754 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3320 5 647 Receptor kinase-like Gene Family AT1G70520 36.611 7.28e-129 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Psa5g3320 Pkinase 8.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3320 - - gmx:100801131 898.271